Lstr000387.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421901.1:4389902-4392984[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-16 2.4e-13 50.8 0.0 1 42 93 135 93 138 0.94 2 2 8.6 1.4e+04 -2.8 0.0 30 41 138 150 137 151 0.71
Sequence Information
- Coding Sequence
- ATGGAGGGGGGCTCAGCTGGTCTACCGCAGGGGGCGCAGTGGAGTATGATGGACACGTACCCCCGATACTCCAACGCGTGTCTCGGCCTCCAACACGACCCAGCCATGTATATGGGGAACGTGATCAACCAGCACATGGAGAACGACATCAACGAGTACGCGCAGGCCGTCGGCGTCACCGGCCCCAGCCCCGGACCCAGCTGCGTCCCCGAGGCGCAGCTCACCCAGGAACAAACCCCACAGCAACCCAAGCGGCGCCGCGCCACCAACCCCCAGTCAGAAGAAAACTTCCAGAGGGCCCTGGAAGCCGTACGCTTCGGAGGCATAGGCTTCTGCAAAGCCGCCAGAATGTTCGGCGTCAACAACAGAACTCTATGGCTCGAATACAAAAAGAAAGGCTACCCCAACAACCGACCCAGCATCAAGTCGCGCATCAAACGCGAACACACCACCCCCCCACCCGAACACAAGGAAGACCCACCCCTCCAAGAGCAGCAAATGGTCCTATGCCCACCCCACCCCGTCCCGGTAGGCTTCATAGACTCGAGACCTCTAGATTTCAACCTACAGGGCGTCCCGCACAACTCGCCCCTCAACATCTTAGGGGTGAACTTCAATAACATGCAATAG
- Protein Sequence
- MEGGSAGLPQGAQWSMMDTYPRYSNACLGLQHDPAMYMGNVINQHMENDINEYAQAVGVTGPSPGPSCVPEAQLTQEQTPQQPKRRRATNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKEDPPLQEQQMVLCPPHPVPVGFIDSRPLDFNLQGVPHNSPLNILGVNFNNMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148410;
- 90% Identity
- iTF_01072369;
- 80% Identity
- -