Edem033665.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000692.1:473266-475324[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-16 3.2e-13 50.6 0.0 1 42 112 154 112 157 0.94
Sequence Information
- Coding Sequence
- ATGGTTATTGTATCATTTCAGAATACTGATCCACACATGAACGTGGAACCCTTGCCGATGGAGGGCGGCTCTGCTGGTCTGCCTCAAGGGGCGCAGTGGAGTATGATGGACACGTACCCCCGCTATTCCAACGCGTGTCTCGGCCTCCAACACGACCCGGCGATGTACATGGGCAATGTGATCAACCAGCACATGGAGAACGACATCAACGAGTACGCGCACGCGGTCGGCGTCACCGGCCCCAGCCCGGGGCCGAGCTGCGTGCCCGAGGCCCAGGTCGCCCAGGAACAGACCCCGGCGCAACCCAAGCGGCGCCGCGCCACCAACCCGCAGTCCGAGGAGAACTTCCAGCGCGCGCTAGAGGCCGTCCGCTTCGGCGGCATTGGCTTCTGCAAGGCCGCCAGAATGTTCGGCGTCAACAACAGGACCCTCTGGCTGGAGTACAAGAAGAAAGGCTACCCCAACAACCGGCCGAGCATCAAGTCGAGAATCAAACGCGAGCACACGACGCCCCCGCCCGAGCACAAGGAGGAAGCGCCCCTGCAGGAACAACAGATGGTCCTCTGCCCGCCCCATCCGGTCCCAGTCGGTTTCATCGACTCGAGACCCCTAGATTTCCCCCTGCAAGGCGTCCCGCACAACTCCCCCTTGAATATTCTGGGTGTGAACTTCAATAACATGCAATAG
- Protein Sequence
- MVIVSFQNTDPHMNVEPLPMEGGSAGLPQGAQWSMMDTYPRYSNACLGLQHDPAMYMGNVINQHMENDINEYAHAVGVTGPSPGPSCVPEAQVAQEQTPAQPKRRRATNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKEEAPLQEQQMVLCPPHPVPVGFIDSRPLDFPLQGVPHNSPLNILGVNFNNMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148410;
- 90% Identity
- iTF_01072369;
- 80% Identity
- -