Nfla004319.2
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986040.1:96321235-96323029[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.9e-05 0.37 11.5 1.2 26 54 203 231 199 231 0.92 2 9 0.031 1.2e+02 3.5 0.9 22 35 227 241 222 252 0.65 3 9 0.0089 34 5.2 0.3 25 52 302 329 274 331 0.90 4 9 0.022 85 3.9 0.0 23 46 356 379 352 385 0.85 5 9 0.033 1.2e+02 3.4 0.0 21 48 382 408 378 410 0.87 6 9 0.35 1.3e+03 0.1 0.1 23 46 440 463 434 469 0.81 7 9 0.079 3e+02 2.2 0.1 21 43 466 488 458 492 0.84 8 9 0.0026 9.9 6.9 0.0 21 49 494 522 489 525 0.86 9 9 0.0037 14 6.4 0.0 21 44 522 545 520 550 0.89
Sequence Information
- Coding Sequence
- atgaaatctgAAATGGATGAAGCATTAGAAAATATATCATTAGAGAAAATATGTCGTGCGTGTATGGCTGAAGATGTAGAAATGCGTTCCATATTTGTACCCGATGAAAATTTGGATACTAATATTCATTTATCAGAAATGATAATGGCCTATGCTTCCGTTCAgATAACTCTTGGTGATGGTTTACCAGaacaaatatgtttaaattGTGCTAGCCAAGTAAGTAAAACATACTCGTTCAAACGACAATGTGAAAAATCGGATGCTGCGTTACGTGAAAAATTAGGATTAGAGAAACTTTATTTACCAAAAGAAGAAATTATGCATACTTTAAATTCGACCTCATTGTTTGATTCAGAAGAGATTGTTATAAAACCTGAGATCAAAGAAATCAGTGACGAAATAGAAGAGGATGAACATGATGAGAATGAAAATGAATATCAGGAAATACACGAGGATATATCAGCTGTAATAGAATCAGACGATGAGGAATATCATACTGAGGATTTAAATGAGCCATcaattaaattagaaattgaagAAGGATTAAAAGAGGAACACATTGAAGAATTAAAAGATATAGcgtttaatattagaaaagtacATGCATGCCCGATTTGTAAAAAGTCATTTAAAAGAAGTAGTCATTTGAATCGACATTTAAGAGTGCATAGTGATTCGAAACCGTGCGTATGTCCTATATGTAATAAAGGTTTTATACGAGAGGATCTTTTAATTAGACATCAAATTGTACATAGTGTTCAATTTAATATCAAACAAGAAGAGGATGTTTCATTCGAtgaagatttaaaattaaattgttcattttgtaataaagtattcaacaaaaaagaGAGTTTATCTTCACATATGAGAAGTCATACGGGTGTAGTcagaaaaatattaacatgtgATGTTTGTCTAAAACATTTTAAGAAACCTAGCCAATTAACacgccatcttaaaatccacgCGTCTATTAAACCTCATATTTGTCAATTGTGTGATAAAGGCTTCGCTCGAGGTGAACAGTTAATAAATCATATGAATGTCCATTCTGGAGTGAAACCCCATGTTTGTAAAATATGTGAAAAGGGATTTAATCAAATCAGTAATCTTAAAGATCATATGCGCACCCATAATGGTGAGAAACCATTTTTGTGTTCAACGTGTGGTAAAGGTTTTAATCAATTAGGAAATTTACGACAACATACAGTTCGACATAGTGGGATTAAAGCACATTTATGTAACACATGTGGAAATGCGTTCGCAAGTAAAGGAGAATTAGGTGCACATTTACGAAAACATACAGGAGTGCGACCATATGTATGTGCCATATGCAATCATGGTTTTACTACATCAAGTTCGCTAACAAAACATAAACGTATACATAGTGGGGAAAAACCATACGAGTGTGATGTGTGTCATATGAAATTTTCTAGAAGTGGTATTTTAGCACGACATAAACGTACACATACCGGTGAAAAACCATATGTGTGTACATTTTGTACAAAAGCATTCTCCCAAAGTAATGATCTCAGTTCACATCTTCgtattcatactggagaaaaaccgtaCATATGTGATGTGTGCGGTCAAGCATTCCGACAAAGTTCTGCactaaatacacataaaaaagtTCATATGGATCGAACTACTTTAATTGAAAGTAGAGCTGCGACATTAGCAATAGTTCAATCTgcattattaaatacattacaaacaaatatttaa
- Protein Sequence
- MKSEMDEALENISLEKICRACMAEDVEMRSIFVPDENLDTNIHLSEMIMAYASVQITLGDGLPEQICLNCASQVSKTYSFKRQCEKSDAALREKLGLEKLYLPKEEIMHTLNSTSLFDSEEIVIKPEIKEISDEIEEDEHDENENEYQEIHEDISAVIESDDEEYHTEDLNEPSIKLEIEEGLKEEHIEELKDIAFNIRKVHACPICKKSFKRSSHLNRHLRVHSDSKPCVCPICNKGFIREDLLIRHQIVHSVQFNIKQEEDVSFDEDLKLNCSFCNKVFNKKESLSSHMRSHTGVVRKILTCDVCLKHFKKPSQLTRHLKIHASIKPHICQLCDKGFARGEQLINHMNVHSGVKPHVCKICEKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCNTCGNAFASKGELGAHLRKHTGVRPYVCAICNHGFTTSSSLTKHKRIHSGEKPYECDVCHMKFSRSGILARHKRTHTGEKPYVCTFCTKAFSQSNDLSSHLRIHTGEKPYICDVCGQAFRQSSALNTHKKVHMDRTTLIESRAATLAIVQSALLNTLQTNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01060941; iTF_00239507; iTF_00240329; iTF_00332860; iTF_00333742;
- 90% Identity
- iTF_00332860;
- 80% Identity
- iTF_01060941;