Ccar009596.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:23926482-23929098[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0025 1.7 9.2 1.3 25 54 201 230 197 230 0.92 2 8 0.18 1.2e+02 3.3 0.3 26 52 302 328 273 330 0.90 3 8 0.11 75 3.9 0.0 23 46 355 378 351 384 0.85 4 8 0.16 1.1e+02 3.5 0.0 21 48 381 407 377 410 0.87 5 8 1.7 1.2e+03 0.1 0.1 23 46 439 462 433 468 0.81 6 8 0.39 2.6e+02 2.2 0.1 21 43 465 487 457 491 0.84 7 8 0.013 8.8 6.9 0.0 21 49 493 521 488 524 0.86 8 8 0.019 13 6.4 0.0 21 44 521 544 519 549 0.89
Sequence Information
- Coding Sequence
- ATGAAATCTGAAATGGATGAAACATCAGAAAATATATCATTAGAGAAAATATGTCGTGCTTGTATGGCTGAAAATGTAGAAATGCGGTCTATATTTGTGCCCGATGAAAATTTGGATACTAATATACATTTATCGGAAATGATAATGGCATATGCTTCCGTTCAAATAACTCTCGGTGATGGTTTACCAGAACAAATATGTTTAAGTTGTGCTAGCCAAGTAAGTAAAACTTATTCGTTCAAACGACAATGCGAAAAATCAGATGCTGCATTACGTGAAAAGTTAGGATTAGAGAAACTTTATTTACCAAAAGAGGAAATAATGCATACTTTAAATTCAACGTCCTTGTTTGATTCAGAAGAAATTGTTATAAAACCTGAGATTAAAGAAATTGGTGATGAAGTGGAAGAGGAGGAACATGATGAAAATGAATTTCACGAGGAAATACACGAGGATATAACGACTGTGTTTGAATCAGAAGATGAGGAATTTCATACCGAAGAATTAAATGATTCATCAATTAAATTAGAAATTGAAGAAGGTTTAAAGGAGGAACAAATAGAAGAATTAAAAGATTTAGCGTTTAGTATAAGAAAAGTACATACATGTCACATTTGTAAAAAGTCATTTAAACGTAGTAGCCATTTGAATCGCCATTTAAGAGTGCATAGTGATTCAAAACCATGCGTTTGTTCTGTGTGTAATAAGGGTTTTATTCGGGAAGATCTTTTAATTAGACATCAAATTGTACATAGTGCTCAATTTAATATAAAACACGAAGAAGATGGTTCATTTGAAGAAGATTTAAAATTAAATTGTTCATTTTGTAATAAAGTATTCAACAAAAAAGAGAGTTTATCTTCACATATGAGATCTCATACGGGTGTAGTCAGAAAAATATTATCATGTGATGTTTGTCTGAAACATTTTAAAAAACCCAGCCAATTAACACGACATCTTAAAATTCACGCATCTGTTAAACCTCATATTTGTCAATTATGCGATAAAGGCTTCGCTCGGGGTGAACAGTTAATTAATCACATGAATGTACATTCAGGTGTAAAGCCACACGTTTGTAAAATTTGTGAGAAAGGATTTAATCAAATTAGTAATCTTAAAGATCATATGCGCACACATAATGGTGAGAAACCATTTTTATGTTCAACTTGTGGTAAAGGTTTCAATCAATTAGGAAATTTACGTCAACATACAGTACGACATAGTGGTATTAAAGCACATTTATGTAACACGTGTGGGAATGCGTTCGCTAGTAAAGGAGAATTAGGTGCACATTTAAGAAAACATACCGGAGTACGTCCTTATGTGTGTGCAATATGTAATCATGGTTTCACCACATCAAGTTCCTTAACAAAACATAAACGAATACATAGTGGGGAAAAACCGTACGAGTGTGATGTATGTCATATGAAATTTTCTCGGAGTGGTATTTTAGCACGACACAAACGTACACATACCGGTGAGAAACCGTATGTGTGTACATTTTGTACAAAAGCATTCTCTCAAAGTAATGATCTCAGTTCACATCTTCGTATTCATACTGGAGAAAAACCGTATATATGTGATGTGTGCGGTCAAGCATTCCGACAAAGTTCTGCACTAAATACACATAAGAAAGTTCACATGGATCGGACCACTTTAATTGAAAATCGAGCCGCTACATTAGCAATAGTTCAATCTGCGTTATTAAATACATTACAAACAAATATTTAA
- Protein Sequence
- MKSEMDETSENISLEKICRACMAENVEMRSIFVPDENLDTNIHLSEMIMAYASVQITLGDGLPEQICLSCASQVSKTYSFKRQCEKSDAALREKLGLEKLYLPKEEIMHTLNSTSLFDSEEIVIKPEIKEIGDEVEEEEHDENEFHEEIHEDITTVFESEDEEFHTEELNDSSIKLEIEEGLKEEQIEELKDLAFSIRKVHTCHICKKSFKRSSHLNRHLRVHSDSKPCVCSVCNKGFIREDLLIRHQIVHSAQFNIKHEEDGSFEEDLKLNCSFCNKVFNKKESLSSHMRSHTGVVRKILSCDVCLKHFKKPSQLTRHLKIHASVKPHICQLCDKGFARGEQLINHMNVHSGVKPHVCKICEKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCNTCGNAFASKGELGAHLRKHTGVRPYVCAICNHGFTTSSSLTKHKRIHSGEKPYECDVCHMKFSRSGILARHKRTHTGEKPYVCTFCTKAFSQSNDLSSHLRIHTGEKPYICDVCGQAFRQSSALNTHKKVHMDRTTLIENRAATLAIVQSALLNTLQTNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01061553;
- 90% Identity
- iTF_00332860;
- 80% Identity
- iTF_00332860;