Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986040.1:96321235-96323029[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.4e-08 3.1e-06 27.8 4.6 1 23 202 224 202 224 0.96

2 12 7.3e-06 0.00027 21.8 0.2 2 23 231 252 230 252 0.96

3 12 1.8e-05 0.00065 20.5 2.1 2 23 273 294 272 294 0.96

4 12 2.7e-05 0.00099 20.0 2.4 2 23 303 324 302 324 0.97

5 12 5.4e-05 0.002 19.0 0.3 1 23 330 352 330 352 0.97

6 12 5.9e-07 2.2e-05 25.2 1.7 1 23 358 380 358 380 0.98

7 12 7.1e-05 0.0027 18.6 0.7 1 23 386 408 386 408 0.94

8 12 0.00044 0.016 16.1 0.4 3 23 416 436 414 436 0.96

9 12 5.1e-06 0.00019 22.2 1.9 1 23 442 464 442 464 0.98

10 12 0.00027 0.01 16.8 1.8 1 23 470 492 470 492 0.99

11 12 5.9e-06 0.00022 22.0 0.9 1 23 498 520 498 520 0.98

12 12 2.5e-06 9.3e-05 23.2 0.2 1 23 526 548 526 548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.4e-08	3.1e-06	27.8	4.6	1	23	202	224	202	224	0.96
2	12	7.3e-06	0.00027	21.8	0.2	2	23	231	252	230	252	0.96
3	12	1.8e-05	0.00065	20.5	2.1	2	23	273	294	272	294	0.96
4	12	2.7e-05	0.00099	20.0	2.4	2	23	303	324	302	324	0.97
5	12	5.4e-05	0.002	19.0	0.3	1	23	330	352	330	352	0.97
6	12	5.9e-07	2.2e-05	25.2	1.7	1	23	358	380	358	380	0.98
7	12	7.1e-05	0.0027	18.6	0.7	1	23	386	408	386	408	0.94
8	12	0.00044	0.016	16.1	0.4	3	23	416	436	414	436	0.96
9	12	5.1e-06	0.00019	22.2	1.9	1	23	442	464	442	464	0.98
10	12	0.00027	0.01	16.8	1.8	1	23	470	492	470	492	0.99
11	12	5.9e-06	0.00022	22.0	0.9	1	23	498	520	498	520	0.98
12	12	2.5e-06	9.3e-05	23.2	0.2	1	23	526	548	526	548	0.98

Sequence Information

Coding Sequence: atgaaatctgAAATGGATGAAGCATTAGAAAATATATCATTAGAGAAAATATGTCGTGCGTGTATGGCTGAAGATGTAGAAATGCGTTCCATATTTGTACCCGATGAAAATTTGGATACTAATATTCATTTATCAGAAATGATAATGGCCTATGCTTCCGTTCAgATAACTCTTGGTGATGGTTTACCAGaacaaatatgtttaaattGTGCTAGCCAAGTAAGTAAAACATACTCGTTCAAACGACAATGTGAAAAATCGGATGCTGCGTTACGTGAAAAATTAGGATTAGAGAAACTTTATTTACCAAAAGAAGAAATTATGCATACTTTAAATTCGACCTCATTGTTTGATTCAGAAGAGATTGTTATAAAACCTGAGATCAAAGAAATCAGTGACGAAATAGAAGAGGATGAACATGATGAGAATGAAAATGAATATCAGGAAATACACGAGGATATATCAGCTGTAATAGAATCAGACGATGAGGAATATCATACTGAGGATTTAAATGAGCCATcaattaaattagaaattgaagAAGGATTAAAAGAGGAACACATTGAAGAATTAAAAGATATAGcgtttaatattagaaaagtacATGCATGCCCGATTTGTAAAAAGTCATTTAAAAGAAGTAGTCATTTGAATCGACATTTAAGAGTGCATAGTGATTCGAAACCGTGCGTATGTCCTATATGTAATAAAGGTTTTATACGAGAGGATCTTTTAATTAGACATCAAATTGTACATAGTGTTCAATTTAATATCAAACAAGAAGAGGATGTTTCATTCGAtgaagatttaaaattaaattgttcattttgtaataaagtattcaacaaaaaagaGAGTTTATCTTCACATATGAGAAGTCATACGGGTGTAGTcagaaaaatattaacatgtgATGTTTGTCTAAAACATTTTAAGAAACCTAGCCAATTAACacgccatcttaaaatccacgCGTCTATTAAACCTCATATTTGTCAATTGTGTGATAAAGGCTTCGCTCGAGGTGAACAGTTAATAAATCATATGAATGTCCATTCTGGAGTGAAACCCCATGTTTGTAAAATATGTGAAAAGGGATTTAATCAAATCAGTAATCTTAAAGATCATATGCGCACCCATAATGGTGAGAAACCATTTTTGTGTTCAACGTGTGGTAAAGGTTTTAATCAATTAGGAAATTTACGACAACATACAGTTCGACATAGTGGGATTAAAGCACATTTATGTAACACATGTGGAAATGCGTTCGCAAGTAAAGGAGAATTAGGTGCACATTTACGAAAACATACAGGAGTGCGACCATATGTATGTGCCATATGCAATCATGGTTTTACTACATCAAGTTCGCTAACAAAACATAAACGTATACATAGTGGGGAAAAACCATACGAGTGTGATGTGTGTCATATGAAATTTTCTAGAAGTGGTATTTTAGCACGACATAAACGTACACATACCGGTGAAAAACCATATGTGTGTACATTTTGTACAAAAGCATTCTCCCAAAGTAATGATCTCAGTTCACATCTTCgtattcatactggagaaaaaccgtaCATATGTGATGTGTGCGGTCAAGCATTCCGACAAAGTTCTGCactaaatacacataaaaaagtTCATATGGATCGAACTACTTTAATTGAAAGTAGAGCTGCGACATTAGCAATAGTTCAATCTgcattattaaatacattacaaacaaatatttaa
Protein Sequence: MKSEMDEALENISLEKICRACMAEDVEMRSIFVPDENLDTNIHLSEMIMAYASVQITLGDGLPEQICLNCASQVSKTYSFKRQCEKSDAALREKLGLEKLYLPKEEIMHTLNSTSLFDSEEIVIKPEIKEISDEIEEDEHDENENEYQEIHEDISAVIESDDEEYHTEDLNEPSIKLEIEEGLKEEHIEELKDIAFNIRKVHACPICKKSFKRSSHLNRHLRVHSDSKPCVCPICNKGFIREDLLIRHQIVHSVQFNIKQEEDVSFDEDLKLNCSFCNKVFNKKESLSSHMRSHTGVVRKILTCDVCLKHFKKPSQLTRHLKIHASIKPHICQLCDKGFARGEQLINHMNVHSGVKPHVCKICEKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCNTCGNAFASKGELGAHLRKHTGVRPYVCAICNHGFTTSSSLTKHKRIHSGEKPYECDVCHMKFSRSGILARHKRTHTGEKPYVCTFCTKAFSQSNDLSSHLRIHTGEKPYICDVCGQAFRQSSALNTHKKVHMDRTTLIESRAATLAIVQSALLNTLQTNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01061553;
90% Identity: iTF_00332860;
80% Identity: iTF_01061553;