Bneb001603.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:50225735-50227512[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0013 3.3 9.3 0.6 26 53 192 219 187 220 0.87 2 9 0.91 2.3e+03 0.2 0.1 21 31 215 225 211 239 0.75 3 9 0.31 7.9e+02 1.7 0.3 25 52 290 317 262 319 0.89 4 9 0.064 1.6e+02 3.9 0.0 23 46 344 367 340 373 0.85 5 9 0.084 2.2e+02 3.5 0.0 21 48 370 396 366 399 0.87 6 9 1.1 2.7e+03 -0.0 0.0 23 46 428 451 422 457 0.81 7 9 0.11 2.7e+02 3.2 0.1 21 46 454 479 446 487 0.79 8 9 0.0062 16 7.1 0.1 21 49 482 510 475 513 0.85 9 9 0.0041 11 7.7 0.0 21 45 510 534 508 538 0.90
Sequence Information
- Coding Sequence
- ATGGAGGATAAACCAGAAATTGCGTTAGATAAAATTTGTAGAGCTTGTATGGCTGAAAATGTTGAAATGCGATCAATTTTTGTCCCAGATGAAAATTTAGATACAAACATACATTTGTCGGAAATGATAATGGCGTATGCTGCCGTTCAGATTACACTTGGTGATGGTTTACCTGAACAAATATGTTTGGATTGTGCTAGTCAAGTTAGCAAGACATATTCGTTTAAACAGCAGTGTGAGAGATCGGATGCTGCTCTGCGTGAAAAACTTGGTTTAGAAAAGCTTGTGCTACCGAAAGAAGAAGTTGTACACTCACTAAATCCGACGTCAGTATTTGATTCGGAAGAAATTGTTATAAAACcagaaattaaagaaattaacgGCGATGACGATGATGATGATTATCCTGAAATGCATGCTGAAATCACTGCGGCCCCAATCGGATCAGAAGACGAATTACTTGGTGATGAAGATATGCAAAATGCTATGAACAATATTAAACAGGAGGTTGAAAATGAGAAAGAAGCTTTGGAAAAATTCAACGATATATCTTATGATATTAGAAAAATTCATACATGTCCGATTTGTAAGAAGTCATTTAATCGTAACAGTCATTTAAGTCGCCACTTAAGAGTGCACACTGCTGAAAAACCGTACGTTTGTTCTATTTGTAGTAAAGGTTTTGTTCGGGAAGATCTTTTAATTAGACATCAAATTGTGCACAATGCCCGGTTAAATCTAAAACAGGAAGATGATTTAATGGAGACAGACATCAAATTGAATTGTTCGTTCTGCGATAAAGTTTTCCATAAAAAAGAAAGTCTCTCCTCTCATATGCGTACCCACACGAGCATCGTTCGGAAAATTTTAACCTGTGAAGTGTGTCTGAAAAAATTCTCCAAACCTAGCCAGTTGACGCGGCACGTTAAAATCCATGCATCAATTAAACCACACATTTGCCAATTATGTGAGAAAGGCTTTGCACGTGGGGAACAGTTGATAAATCATATGAACGTACATTCTGGCGTCAAACCTCACGTTTGTGAAATTTGCGATAAAGGCTTCAACcaaataagtaatttaaaagatCATATGCGCACCCACaacggtgaaaaaccatttttgtGTTCAACTTGCGGAAAAGGGTTCAATCAATTGGGTAATTTACGTCAACACACAGTTCGACATAGTGGTATCAAAGCTCATTTGTGTAACACATGTGGCAACGCATTTGCCAGCAAAGGAGAACTAGGTGCCCATTTACGTAAACATACCGGCGTTCGACCGTACGTTTGCAACATTTGTAATCACGGTTTCACCACATCCAGCTCGTTGACCAAACACAAACGAATTCATAGTGGGGAGAAACCATATGAATGTGATGTGTGCCATATGAAGTTTTCACGTAGTGGCATATTGGCACGTCACAAACGTACAcataccggtgaaaaaccatacgttTGCACTTTTTGTACCAAAGCATTTTCCCAAAGTAATGATCTTAGTTCCCATTTGCGTATTCATACCGGTGAGAAACCGTACATATGTGATGTTTGTGGTCAAGCATTTCGTCAAAGTTCGGCGCTTAAGacgcataaaaaaatacatatggATAGAAGTGCGTTAGTTGAGAATAGAGCGGCGGTGGCAACGTTAGCACTAGTTCAGTCAGCGTTTCTCAATAGTTTACAGACaattaaatag
- Protein Sequence
- MEDKPEIALDKICRACMAENVEMRSIFVPDENLDTNIHLSEMIMAYAAVQITLGDGLPEQICLDCASQVSKTYSFKQQCERSDAALREKLGLEKLVLPKEEVVHSLNPTSVFDSEEIVIKPEIKEINGDDDDDDYPEMHAEITAAPIGSEDELLGDEDMQNAMNNIKQEVENEKEALEKFNDISYDIRKIHTCPICKKSFNRNSHLSRHLRVHTAEKPYVCSICSKGFVREDLLIRHQIVHNARLNLKQEDDLMETDIKLNCSFCDKVFHKKESLSSHMRTHTSIVRKILTCEVCLKKFSKPSQLTRHVKIHASIKPHICQLCEKGFARGEQLINHMNVHSGVKPHVCEICDKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCNTCGNAFASKGELGAHLRKHTGVRPYVCNICNHGFTTSSSLTKHKRIHSGEKPYECDVCHMKFSRSGILARHKRTHTGEKPYVCTFCTKAFSQSNDLSSHLRIHTGEKPYICDVCGQAFRQSSALKTHKKIHMDRSALVENRAAVATLALVQSAFLNSLQTIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01061553;
- 90% Identity
- iTF_00239507;
- 80% Identity
- iTF_00239507;