Nvir005245.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Netelia virgata
Gene Symbol
tfip11
Assembly
GCA_951802705.1
Location
OX637864.1:20529051-20532553[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.5e-98 2.5e-94 316.1 17.8 1 275 401 668 401 668 0.98
2 2 0.0036 37 4.0 0.1 243 273 681 711 673 713 0.88

Sequence Information

Coding Sequence
atgtCCGAGGACGAAGTTGAAAGTTTTGAAATTACGGATTACGATTTAGACAATGAGTTTAATATTAATCGGCCGCGAAGAAAGCTCACAAAGCAGCAACAAATGCTTGGTATATGGGGCGATGATAGTGATGAAGAGCAAGTACCGGCAAAGCATTCCAAACCATTCAACAAAGGACCGAAAAATTATACAGCGCCTGTCAATTTCGTTGCTGGCGGAATCCAACAGTCTGACAAGCCCAAAAcggaacagaaaaaagaagaagctgGAAAGGATGACGATGAAAACGACGATATGCAAAGACCTCGAAGAGGCGATGATGATTATGTGCCAAATAGTTCTAGCGAATCCGAAGACGAAACCGTTCTTAATACAAAGTCAAGACCGTCCTTCTCCATGGAGATGCAAGGTGACATAGCAGGATTGAGGCGAAAAGGCGGGCAGGTCAATCCAGCCTTGATCAAAACTGGAGTTGGTAGCTGGGAAGTACATACAAAGGGCATAGGAGCCAAGCTTTTACTACAAATGGGTTTCGAGCCTGGTAAAGGTCTGGGTAAGAAGCTGCAAGGCATCAACGCACCTGTAGAGGCTTGCGTCAGAAGAGGTCGAGGAGCTATAGGTTCTTATGGTCCCGAAAAACTGGCAAAAGGAccagaaaagaagaaagacgaagagaaggaagaaacaaaagaattcAAAGTAAAATTATCGCAATGGCGTAAAGGCGATGGGGCGAATAGTACTAAGAAGAAATTTCGGTACCATTATCGTAGTGTCGATCAGGTATTAGAGGATGGTAAAACAAGGCCCAATAGAAAACCAGTAGCGAGTAACGACATCAGCCATGTCAAGGTTATAGATATGACTGGTCCGGAACAACGAGTTCTCAGTGGGTATCATGCAATTGCAGGCGGCCAAAAACGACCCGACGACGCGATTGTATTAACCGACAAAAAGACATCTGGTAATTTCGAACTACCCGAGCTACAGCACAATCTCAACTTATTGGTTGATATGTGCGAACAAGATATAATACAGAACGATCGAAGGACGCGCAATTTGAACAACAGAGTAGTCGCCCTCGAGgctgagagaaaaaatataacaaaagtGGTAAATCAGCAGGAACAATTGATGGACACGTTGCAGAACGTGCTCACAATCGTCGACAGATTAATGGATCAGAGTGACGAAATTACACTCAAAGAAACGGCTGAAGCTTTcaagaaattacaaaataattattacgaagAATACAAGCTCTACGAATTGGGCGAATTAGCCAGTAGTTTCGTAGCACCAAAAGTGAAGGAGGCTCTAGCGAGTTGGAACCCACTTGTGCAACCGAGACAACCAATGACCATGATAAAAGAGTGGAAGGACATTCTCGAGACAGGAGTGGGTACACTACAGTCGCGCGAGATGCAACCATACGATCAGCTAATTTGGAACGCTTGGATGCCATCGATACGAGGCTTGGTACAggAATGGACATGCCGGCAACCTGATCCATTAATCGAGTTGATAGAAGATTGGATGCCACTACTTCCGGCATggattttggaaaatatattgGATCTATTGATTTTACCAAAATTGACACTCGAGGTGGAGGAATGGAATCCGCTAACGGATACGGTTCCTATTCACACTTGGATCCATCCGTGGCTCCCGTTAATGCGCAATCGTATGGACACACTAATTTATCCGATAATCCGCCGTAAATTAGGATCTGCCTTGGGTGGTTGGCATCCTTCGGATAGATCAGCTCGATTAATGTTACAGCCATGGGCACAAGTATTCACAAAGGGTGAAATGGAAGCTTTCcttgttaaaaatattgtccCGAAGCTCCAAGTTGCTCTTTCCGAATTCGTGATAAATCCTCATCAGCAACACTTGGATCAATGGAATTGGGTTTACGAATGGTCTACGTTGCTTCCGATTCAAATAATGGTCGGAttattggataaattttttttttccaaatggcTTCAAGTACTCGCACTGTGGCTTAATCATTCACCGAATTATGACCAAATAACTAATTGGTACATGGGTTGGAAGGGTATGCTGAATGACAAGTTACTAGCTGAACCAGTTGTTAAAGAGTACTTCAAAAAAGCCCTGGATATGATGAATAGAGCGGTAGCCACACCTCAGGCTCATCAACCGGGTGCCATGGAACAAGTTTCGTACTTGACGAGTTTGGAGCGGACTCAGCCTACGATGTCGCAAATACCGGCAAATGCACAGCCAAGAATCGAGAGGCTGGCTGAAGCTGTACGAACTGCATCACAGATACCACAAGGCTTCAAGGATCTTGTACAGAAAAAATGCGAGGAGCGAGGCATACTTTTTATGCCGATTCCTAATAGATATCGCGAGGCTAAACAAGTCTATAAAGTTGGCAACGTTCAAGTTTATATCGAAGGCAgcgttttgttcgtttgtcaCAATGGCACGAATTGGGTACCAACTCATCTAAATGCTCTACTCGATATGTCTGAGATGTAA
Protein Sequence
MSEDEVESFEITDYDLDNEFNINRPRRKLTKQQQMLGIWGDDSDEEQVPAKHSKPFNKGPKNYTAPVNFVAGGIQQSDKPKTEQKKEEAGKDDDENDDMQRPRRGDDDYVPNSSSESEDETVLNTKSRPSFSMEMQGDIAGLRRKGGQVNPALIKTGVGSWEVHTKGIGAKLLLQMGFEPGKGLGKKLQGINAPVEACVRRGRGAIGSYGPEKLAKGPEKKKDEEKEETKEFKVKLSQWRKGDGANSTKKKFRYHYRSVDQVLEDGKTRPNRKPVASNDISHVKVIDMTGPEQRVLSGYHAIAGGQKRPDDAIVLTDKKTSGNFELPELQHNLNLLVDMCEQDIIQNDRRTRNLNNRVVALEAERKNITKVVNQQEQLMDTLQNVLTIVDRLMDQSDEITLKETAEAFKKLQNNYYEEYKLYELGELASSFVAPKVKEALASWNPLVQPRQPMTMIKEWKDILETGVGTLQSREMQPYDQLIWNAWMPSIRGLVQEWTCRQPDPLIELIEDWMPLLPAWILENILDLLILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLMRNRMDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAQVFTKGEMEAFLVKNIVPKLQVALSEFVINPHQQHLDQWNWVYEWSTLLPIQIMVGLLDKFFFSKWLQVLALWLNHSPNYDQITNWYMGWKGMLNDKLLAEPVVKEYFKKALDMMNRAVATPQAHQPGAMEQVSYLTSLERTQPTMSQIPANAQPRIERLAEAVRTASQIPQGFKDLVQKKCEERGILFMPIPNRYREAKQVYKVGNVQVYIEGSVLFVCHNGTNWVPTHLNALLDMSEM