Nvir011377.2
Basic Information
- Insect
- Netelia virgata
- Gene Symbol
- bab1
- Assembly
- GCA_951802705.1
- Location
- OX637866.1:1994192-1996937[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-16 7.3e-13 48.2 0.0 5 43 1 40 1 42 0.95 2 2 2.3 1.9e+03 -1.2 1.1 6 15 117 126 115 130 0.89
Sequence Information
- Coding Sequence
- ATGGCTGAAGCGATTTTCAGCGTTCTGAAGGAAGGACTTTCCCTCAGTCAGGCTGCCAGAAAATACGACATCCCATATCCGACTTTCGTGCTGTATGCGAATCGAGTACACAACATGCTCGGTCCAAGCTCCGATGGCGGGGCCGGTGAGTATCTTCGACCGAAGGGTCGTGGAAGACCGCAGAGGATTCTACTTGGCGTATGGCCGGACGAGCACATACGCGGTGTGATACGAACGGTTGTCTTTCGCGACGGTAACATCAAGGAGGAGCCAACACCGATTTATCCGAGCCTGACGAATTACGCGTGCAACGGTCCGGAGGGTGCGGTCAGTCCTGGTGCTGCAGCGGCAGCTGCGGTTGCCGCGGTCGCTCAAGGTCTGAGACATCAAATGTGCAGTATGGTGGCAGCGGCACAGTCCCATCAACACGACATGATGGCGACCAATCTCTCGGCGAACTTTCAAGCCGCGGTTCAAGTCAGTCAGCATCATCTGAACAACAATAGTCCAGCGagcaacaataacaacaacaataataacaacaataacagcAACAGTAACAACAGAAATTCGCCGTTGATGCTTGGATTACCGAGTCCAGGCTCGGGAGGACCACCCGAGAGTCCTATGGAGGGAAGCCCATTGGCGAGTCCTATGGCACCTTTGATGGATCCGGCTCACATACCGAGCAGTGTCGAAGTTGGAATCGGGGTCAGCGGTATGACTTACAAACCGACCCGAAGTTTCATCAGTCCGAGACCGGAGAATATGTTTCAGGAGGATATCGCCGATCTTGTCAAGAGCGCTCACGCTCACAAGGACAAGGAAAAACTACCGGTGAAACTCGAGCCACTCGCGGAATCGCGAAGCGAgcagtaa
- Protein Sequence
- MAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRTVVFRDGNIKEEPTPIYPSLTNYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAQSHQHDMMATNLSANFQAAVQVSQHHLNNNSPASNNNNNNNNNNNSNSNNRNSPLMLGLPSPGSGGPPESPMEGSPLASPMAPLMDPAHIPSSVEVGIGVSGMTYKPTRSFISPRPENMFQEDIADLVKSAHAHKDKEKLPVKLEPLAESRSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00168303; iTF_01299079; iTF_01306356; iTF_00828698; iTF_00829404; iTF_00265595; iTF_00439384;
- 90% Identity
- iTF_01508780; iTF_00262573; iTF_00439384; iTF_00798492; iTF_01055888; iTF_00829404; iTF_00828698; iTF_01299079; iTF_00265595;
- 80% Identity
- -