Ntho008354.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- retn
- Assembly
- GCA_964017225.1
- Location
- OZ024922.1:14847006-14857489[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-20 1e-16 61.2 0.0 16 89 32 103 22 103 0.95
Sequence Information
- Coding Sequence
- ATGGTCGAACCCTCGACTATAATGGCCCTCGAGAAAGATCTCGCGCCTATCGAGAGAGCTAAAATACGAGATAAAAGCGCTGGTGTAATACCGCGTGGAACTCCGATCAATCGTTTGCCGATAATGGCAAAATCGGTGCTCGATCTGTACGAGCTGTTTCAGTTGGTGATAGCCCGAGGCGGCCTCGTCGACGTTATAAACAAGAAACTCTGGCAGGAAATCATCAAGGGCCTCCACCTGCCATCTAGTATCACGTCGGCCGCGTTCACGCTGCGAACTCAATACATGAAATATCTTTATCCGTACGAGGGTGAAAAATTGGGCCTGTCGACACCGGCGGAGTTGCAAGCGGCCATCGATGGAAATCGACGAGAAGGACGCAGAAGCAGTTACGGCACTTATGGCGGAGGAGGGGGCGGTGGTGATGGTATGATCCAGAGAAATCCACACACACCGGGCTCGATGGCGTTACATGCCCAAATGTCACCTCTGTCGCTCGTTTCGGCCGTCGCTGGTGGACAACATCACGGCTCGCAATCACTTGTCAACGGTAGCGCGGCTCACACACCTCTGCCACATCATCCCCATCATCCGCAGCATCCCCAAGGTCCGATACCAGGAATGGCACCGGCTGAATTCGAAGCCCGAATGGTCGAATACGTGAAGCTACTGAACAAAGAATTGAGAAGCGCCGGTGGCGCCACTCCACCGCCTATGATACATCGACAGGGTAGCGCGTCGCCACCGTCGTCGACACCACCGCGCGACAACGCCTTCAGTGCTCTCGAAATGTCGCGACTCACGCTATGGAacatatacaataataatacgcTGTATCCTGGCGTTGGTCATCAACCACCTCTGTCGCCGCAAACCTCGAATTCGCCACATCCCCAAGCTGCGAGCCCTGAACCACAGAGAGAAGCCCTCGATCTTGGTCTCAGATCATCACCTTTGTCGTCGTCACCGACGAGACACAGTCCGCCCTCGTCGAGCAGTAGCATTCAGGTGAAGAGGGATCAAGATCTCACAGGTACACCTGGTCCACCACCTGCCAAGAGACTACTCTCGGACGACGATAGTCCTATCGAGAAGAGCGTACCGGCACTAGCAGGCACTCACATCAAGATCTCGAATCGTGgCGACGGTCGAAACGGCGATAATTCTCTCGTTGTCAGTATGGAGCTGAATGGAGTCATGTACCAAGGTGTTCTATTCGCACAGACGGACGGCAGGAGTACGGCGAGCGCTACTAATAATAACACAAAAGCGGCGCGAAGCATCGTCTCGTGA
- Protein Sequence
- MVEPSTIMALEKDLAPIERAKIRDKSAGVIPRGTPINRLPIMAKSVLDLYELFQLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEGEKLGLSTPAELQAAIDGNRREGRRSSYGTYGGGGGGGDGMIQRNPHTPGSMALHAQMSPLSLVSAVAGGQHHGSQSLVNGSAAHTPLPHHPHHPQHPQGPIPGMAPAEFEARMVEYVKLLNKELRSAGGATPPPMIHRQGSASPPSSTPPRDNAFSALEMSRLTLWNIYNNNTLYPGVGHQPPLSPQTSNSPHPQAASPEPQREALDLGLRSSPLSSSPTRHSPPSSSSSIQVKRDQDLTGTPGPPPAKRLLSDDDSPIEKSVPALAGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQTDGRSTASATNNNTKAARSIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01129126;
- 90% Identity
- iTF_00050596; iTF_01129126; iTF_01057422; iTF_01306177; iTF_00840839; iTF_00397841; iTF_00397056; iTF_01508647; iTF_01055755; iTF_00262447; iTF_00439248; iTF_00265456; iTF_00263158; iTF_00266238; iTF_01101113; iTF_01102567; iTF_01100372; iTF_00798363; iTF_01101851; iTF_01103333; iTF_00652465; iTF_00342931; iTF_00829269; iTF_01207133; iTF_01497169; iTF_00628894;
- 80% Identity
- -