Basic Information

Gene Symbol
retn
Assembly
GCA_963669185.1
Location
OY769911.1:668232-677341[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.4e-19 3.1e-16 59.6 0.0 17 89 4 74 1 74 0.94

Sequence Information

Coding Sequence
ATGGCGGGCGGAACTCCGATAAATCGTTTGCCAATAATGGCGAAATCGGTGCTTGATCTGTACGAGCTATTTCAGTTGGTAATAGCCCGGGGCGGTCTCGTAGACGTTATAAACAAGAAGCTCTGGCAGGAAATCATCAAGGGACTCCACCTGCCGTCTAGTATCACATCGGCCGCCTTCACGCTACGAACCCAATACATGAAATATCTTTACCCATACGAGGGTGAGAAATTGGGACTCTCAACACCGGCAGAACTTCAGGCAGCGATTGATGGCAATAGACGAGAGGGACGGAGAAGCAGTTATGGGACTTATGGCGGTGGTGGAGGCGGTGGTGATGGTATGATCCAAAGAAATCCACACACACCGGGCTCGATGGCGTTACACGCCCAAATGTCACCCCTCTCGCTCGTCTCCGCGGTTTCCGGTGGTCAACATCATGGCCAGTCACTTGTCAACGGTAGCGCGGCTCACACACCTATGCCACATCATCCCCATCATCCGCAGCATCCCCAAGGTCCGCTAGGTCCTATACCGGGAATGGCACCGGCCGAATTCGAGGCTCGTATGGTTGAATATGTTAAACTATTAAACAAGGAATTGAGAAACGCCGGTGGCGCCACACCACCGCCAATGATACATCGGCAGGGTAGCGCGTCACCACCTTCGACGACACCACCGCGCGACAGCGCATTCAGCGCCCTCGAAATGTCACGATTAACGCTATGGAACATGTACAACAACAATACCCTGTATCCTGGGGTTGGTCATCAACCACCTCTTTCGCCACAGACCTCAAATTCACCTCATCCACAAGCTGCGAGCCCTGAACCACAGAGGGAAGCCCTCGATCTTGGTCTCAGaTCATCGCCACTGTCGTCCTCACCGACGAGACACAGTCCGCCCTCTTTGAGCAATAATAGCATTCAAGTGAAGAGGGATCAAGATCTCACCGGCCCACCTGGCCCACCACCTGCCAAGAGGCTACTCTCTGACGACGATAGTCCCAACGAGAAGAGCGTACCAGCTTTGGCGGGTACTCACATCAAGATCTCCAACCGTGGTGACAGTCGAAATGGCGATAATTCACTCGTTGTCAGTATGGAATTGAACGGAGTCATGTACCAGGGTGTTTTGTTCGCACAGACGGACAGCAGGAGTACAGCGAGCGCTACTAATAACAATACAAAAGCTGCGCGAAGCATCGTCTCGTGA
Protein Sequence
MAGGTPINRLPIMAKSVLDLYELFQLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEGEKLGLSTPAELQAAIDGNRREGRRSSYGTYGGGGGGGDGMIQRNPHTPGSMALHAQMSPLSLVSAVSGGQHHGQSLVNGSAAHTPMPHHPHHPQHPQGPLGPIPGMAPAEFEARMVEYVKLLNKELRNAGGATPPPMIHRQGSASPPSTTPPRDSAFSALEMSRLTLWNMYNNNTLYPGVGHQPPLSPQTSNSPHPQAASPEPQREALDLGLRSSPLSSSPTRHSPPSLSNNSIQVKRDQDLTGPPGPPPAKRLLSDDDSPNEKSVPALAGTHIKISNRGDSRNGDNSLVVSMELNGVMYQGVLFAQTDSRSTASATNNNTKAARSIVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01129126;
90% Identity
iTF_01056577;
80% Identity
-