Basic Information

Gene Symbol
nfxl1
Assembly
GCA_032362435.1
Location
JAUMHM010000016.1:30721611-30726918[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.53 4.7e+04 -3.2 1.1 15 19 124 128 123 128 0.81
2 19 0.072 6.5e+03 -0.5 0.8 4 10 159 165 158 165 0.95
3 19 3.3e-08 0.003 19.8 17.3 1 19 173 190 173 190 0.99
4 19 9e-05 8 8.8 16.5 3 19 228 244 216 244 0.83
5 19 1 9e+04 -4.6 1.0 6 10 269 273 269 273 0.81
6 19 0.0095 8.5e+02 2.4 13.0 4 19 282 298 279 298 0.91
7 19 2.3e-05 2 10.7 10.1 1 18 334 351 334 352 0.97
8 19 0.44 4e+04 -3.0 10.2 1 12 386 397 386 397 0.92
9 19 0.61 5.4e+04 -3.4 1.7 6 10 407 411 407 411 0.97
10 19 6e-08 0.0054 19.0 13.5 1 19 417 435 417 435 0.92
11 19 0.56 5e+04 -3.3 0.5 6 10 464 468 463 468 0.91
12 19 0.00025 22 7.4 7.4 9 19 483 493 481 493 0.90
13 19 0.00026 23 7.4 8.0 1 12 503 513 503 513 0.95
14 19 0.43 3.8e+04 -2.9 5.8 14 18 546 550 546 551 0.89
15 19 0.8 7.1e+04 -3.8 0.6 9 12 568 571 568 571 0.77
16 19 5.3e-05 4.7 9.6 6.6 1 12 587 598 581 598 0.91
17 19 0.39 3.5e+04 -2.8 1.7 6 10 614 618 613 618 0.88
18 19 0.0012 1.1e+02 5.2 14.8 3 19 627 643 626 643 0.92
19 19 5.8e-07 0.052 15.8 9.3 1 16 688 702 688 708 0.86

Sequence Information

Coding Sequence
atgaggaaattcagACGAGCCCAGGCGGAAAATCAAGCAGCCATTGAAAAACATTTAGTGGCAAATGACTTGCTGGATTCTTCCagtgaagaagaagaaaatggaaACGTTTTAGAGGAAGCAGTAGATAAAGTTTTGTCCTTGTATCAGGTCGAAGGTGGTGATGCAGGAAAGACTCTTTCGTATTTAAGCGACATTTTGCAATCGGGAGGAGCAATTTGCTTAATTTGTATTTCATCTGTGAAGAAAACGGACGCGatATGGAACTGCGTCAAGTGCTTCACTTTCATGCATTTACCTTGCATTCAGCATTGGATACGCGACAGTTTGAGTTACAAACGAGAAAAGGGAATCACTCCCCAGTGGGCTTGTCCAAAGTGCCGAACCGATTACCAAGAAAACGAGGTGCCAACCAAATATCTCTGCTTCTGTGGCAACTCTGTCGACCCAGCCTACCAACCCTGGTCGATTCCACACTCGTGTGGCGAAACTTGTGGAAAATTACTTGAACCAAATTGTGGACACAAATGCGTTCTTCTCTGCCATCCAGGACCTTGTCCTCCCTGTCCAAAAACCGTCTCCACAAAATGCTTTTGTGGCAAACAACCGGCTCGTCCTCGTCGTTGCAACGTCAAAGAATGGAGTTGCGGGAGCATCTGCggaaaaaactacaaaacctgcAACCACAGCTGCCAGGAAGAATGTCACAGAGAAGAATGTCCTCCATGTACCGAAATTGTGCTCGCTTCCTGCAACTGCAAATCCAAAAGCGAGCCTCAACCTTGCAACCAATCCACCTGGTTTTGCGACAAACCCTGCGATCGTCAATTTCCCTGTAAGGTACACATCTGCAAAGGTGTTTGCCACAAACCCGGCGACTGCAAAGGCTGTCCCATTGAAAAAAACAGAACATGTCCCTGTGGAAAGAAGAAATACACCGTTTCTTGCAAACAGGAACATGTTCCCACTTGTGGCGATACCTGTGGCAAACTTTTAGACTGTGGTCGCCATTATTGCAACATGAGGTGCCATACGGAAAAATGTGGACAGTGTCTGGAAGTGGTCATCAAAACCTGCCGCTGTGGTAGTTTCCAAAAAGAGATTGCTTGTACGAAAGAATTCCACTGTAATAGGAAATGCACCCAGTGGAGACTTTGCGCAAGACATCactgtaataaaaaatgttgcgactgcttgattaaaaatacattcaacGTTTGCGAGAAAGTTTGCGACAACCAGCTCAATTGTCAGAAACACAAATGTGCCGCTCCTTGCCACAGCGGACCTTGTTATCCTTGCACTCGGAGCGATGTGATTCAGTGCAGATGTGGAAGCAGCAAAATCACAGTTCCTTGTGGATCTGTCAAGAGAATCAAGCCTCCGGCTTGCAACAAGCTTTGCAAGATTCCACCAGTTTGTCACCACCCGAAACGAGAGTCACACAAATGCCACCAGGGTTATTGTCCACCTTGCAAGAAAATTTGTGGATTGGTTCACAGGAAATGTGGACACACTTGTCCTGCGACTTGTCATACCAAAGTTTGGATGAAAGTCAAGATTAATGGAGTTAATTCCCAGCCGACTGCACCTTGGGATAATAATAGGAAGGAGCAGTGGAAGCTAAAGACACTTCCTTGTCCTCCTTGTGAGGTTTCGGTGATGGTAACTTGTTTAGGAGGACATGAGACTTTACCCTGGCCCTGTCATAAAGCGGTTCCTAGTTCCTGTTTGAGGGAATGTGGGAGGTTATTGGCTTGCACGAATCACAACTGTGAGAAGCTTTGTCATAAAGTGGATTTGGGACAAGATGCGTGTAAAGAGAATAGGTGTATAGAGTGTGAAAAGCCCTGTGCCATTCCTAGACCGGAAGGATGTACTCACCCGTGTCTTAAGACTTGTCATCCGGCTCCATGTGCTCCTTGTAAACAGCTCATCAGAGTTGGATGTCATTGTGGAATCAATTTTCTGTACAAGAGGTGTGCTGAACTCACTTTTGCGGCGGAAAAACAAAAGGAGGAAATGCTGAGGTGTGGGAACCAGTGTCCGAAAAATTATCTCTGTGGTCATCGCTGTATCGACATTTGCCATCCAGGTTCTTGTTTGAATCAAGAGTCTTGCAACAAGAAAGTCAAGCTTTTATGCAAGTGTAAGCGActtaaaaaggatttttcatgttttcaagtTCGCAAGGGCCAAGGTCTGGTCGAATGTGACGACGTCTGTCgtcaaaaaaaggaagaattagAACGAGCTCGTGAGATTGAAATAGCGAAAAAAAATAAGGAGGAAGAACTCCGCAATCAAAGAGAAATAGAGatgtttgaaaagaaattcaaaccTCGTCGAAAGATTAAGGATAGATCGCACAACATCAATAAATCAAAATCCGGTTCGAAAAACTGGATAAAATATTCACTAATCGCCATTATTTTGGCAATTGTAGCTTTTGCGAtaacatatttcaaaacttttgtttaa
Protein Sequence
MRKFRRAQAENQAAIEKHLVANDLLDSSSEEEENGNVLEEAVDKVLSLYQVEGGDAGKTLSYLSDILQSGGAICLICISSVKKTDAIWNCVKCFTFMHLPCIQHWIRDSLSYKREKGITPQWACPKCRTDYQENEVPTKYLCFCGNSVDPAYQPWSIPHSCGETCGKLLEPNCGHKCVLLCHPGPCPPCPKTVSTKCFCGKQPARPRRCNVKEWSCGSICGKNYKTCNHSCQEECHREECPPCTEIVLASCNCKSKSEPQPCNQSTWFCDKPCDRQFPCKVHICKGVCHKPGDCKGCPIEKNRTCPCGKKKYTVSCKQEHVPTCGDTCGKLLDCGRHYCNMRCHTEKCGQCLEVVIKTCRCGSFQKEIACTKEFHCNRKCTQWRLCARHHCNKKCCDCLIKNTFNVCEKVCDNQLNCQKHKCAAPCHSGPCYPCTRSDVIQCRCGSSKITVPCGSVKRIKPPACNKLCKIPPVCHHPKRESHKCHQGYCPPCKKICGLVHRKCGHTCPATCHTKVWMKVKINGVNSQPTAPWDNNRKEQWKLKTLPCPPCEVSVMVTCLGGHETLPWPCHKAVPSSCLRECGRLLACTNHNCEKLCHKVDLGQDACKENRCIECEKPCAIPRPEGCTHPCLKTCHPAPCAPCKQLIRVGCHCGINFLYKRCAELTFAAEKQKEEMLRCGNQCPKNYLCGHRCIDICHPGSCLNQESCNKKVKLLCKCKRLKKDFSCFQVRKGQGLVECDDVCRQKKEELERAREIEIAKKNKEEELRNQREIEMFEKKFKPRRKIKDRSHNINKSKSGSKNWIKYSLIAIILAIVAFAITYFKTFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2