Lchi011527.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- bab1
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000100.1:11711-19891[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-17 1.4e-14 54.1 0.0 1 43 28 71 28 73 0.95 2 2 3.4 4.3e+03 -1.8 1.6 6 15 163 172 159 174 0.83
Sequence Information
- Coding Sequence
- ATGTGGCAGAAATGCTGGAACACCAACCAAAGCCTGGTGCACAACCTGCGGTTCCGCGAGCGCGGCCCACTCAAGTCCTGGAGGCCGGAGACCATGGCGGAGGCCATCTTTTCGGTCCTGAAAGAGGGCCTCTCGCTGTCCCAGGCGGCAAGGAAGTACGACATCCCGTATCCGACGTTTGTGCTGTACGCCAATCGGGTCCACAACATGCTTGGCCCCAGCGCCGATGGAGGCGCAGATCTGAGGCCCAAAGGACGCGGGCGTCcgcaacgcatcctgctggGCGTTTGGCCCGACGAGCACATCCGCGGCGTCATCCGCGCCGTCGTCTTCCGGGATACGCACGCACCACACGCTGCACACCACATCAAGGAGGAGGTCCTCCCTTACCCTTCCATTACGGATGGAATGACTGTCCAGAACGCATATGGAACCGTGGCGTGTGGCAACGGGCGCGAAGGCGGCGTTTCGCCGAACgctgccgccgccgccgccgtggCTGCAGTGGCTCATGGCCTGCGTCGCCAAATGTGCAACATGGTAGTGGCAGCCCAAAGGCCACCCGATCACCCTCAGCACCTCAGTCTGCCTCCACTACCACTACAGTCGCCCCGTCTACCATCCCCCTTGTCAGCCGGATTGGAATCCCCACTTTGCTCTCCTCCGCCGCCGGGGCACGCTCTGGAACCACCAAAGCCAAATGATCCATTCCGCCCGTTCGCCTCCCCCCGCCCGGACAGCCGTTACAGCGAGCGCGACTCCATTGCCGACATCACAGAAATGGGCCCGCCTAAGACTCCAGTAGGCATGGCGAAGAATGGCAAAGATCTGGTCACACCGCTACCAGTGAAGATGGAGCCGCCCCCTGCAGAGGCGCGTGCTGAGAACATCTGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPHAAHHIKEEVLPYPSITDGMTVQNAYGTVACGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPQHLSLPPLPLQSPRLPSPLSAGLESPLCSPPPPGHALEPPKPNDPFRPFASPRPDSRYSERDSIADITEMGPPKTPVGMAKNGKDLVTPLPVKMEPPPAEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_00279050; iTF_01156203; iTF_00204291; iTF_01157579; iTF_01154934; iTF_01158614; iTF_01337694; iTF_00026771; iTF_00027682; iTF_00197299; iTF_01176124; iTF_00249640; iTF_00180388; iTF_01129966; iTF_01141593; iTF_01145218; iTF_01138883; iTF_01148755; iTF_01143766; iTF_01143036; iTF_01142334; iTF_01148031; iTF_01495707; iTF_01494243; iTF_00855806;
- 80% Identity
- -