Pelw020595.2
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- bab1_1
- Assembly
- GCA_029641285.1
- Location
- CM056366.1:4143147-4156499[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-18 1.6e-14 53.8 0.0 1 43 81 124 81 126 0.95 2 2 2.8 6.4e+03 -2.6 2.0 6 15 218 227 214 228 0.82
Sequence Information
- Coding Sequence
- ATGGAGATGCGTGGTACGCAAACACTTAACGCCGATCCGGCGTCCGTCTCTGACGCGTCAATAATTGTAACGGCTAAGTTGCTCGAGAATTCGCATGCCTGGCTCGGTGCCTCAACATCTTCTATTGCAGCAGATAGCTACCAGTACCAACTGCAGTCGATGTGGCAGAAGTGCTGGAACACCAACCAGAGCTTGGTGCACAACCTGCGCTTCCGCGAGCGCGGCCCGCTTAAGTCTTGGCGCCCGGAGACAATGGCCGAAGCCATCTTTTCAGTCCTGAAGGAGGGACTGTCGCTATCGCAGGCTGCTAGGAAGTACGACATACCGTACCCTACCTTCGTGCTGTACGCCAACAGGGTGCACAACATGCTCGGACCCAGCGCCGATGGAGGCGCAGATCTGAGGCCCAAAGGACGTGGCCGTCCGCAGCGTATCCTGCTGGGCGTGTGGCCCGACGAGCACATCCGCGGCGTCATCCGCGCCGTCGTCTTTCGAGATACCCATGCGCACTCCGCTCATCACATCAAGGAGGAGGTCCTTCCTTATCCTTCTATCACGGATGGAATGACTGTTGGAGTACCACCGAACGTATACGGATCCGTGGGATGTGGCAACGGACGCGAAGGCGGCGTCTCACCGAATGCAGCCGCCGCGGCCGCAGTGGCGGCCGTCGCACACGGACTCCGTCGTCAGATGTGCAACATGGTCGTGGCAGCGCAAAGACCACCCGATCATCCTCCGCATCTCAGCTTGCCGCCACTGCAACTCCAGTCGCCGCGTCTACCGTCGCCGATGTCCGCCGGCTTAGAATCTCCGCTATGCTCTCCGCCACCACCGGGCCACGCTCTAGAGCCGCCGAAACCGGCTGACCCATTCCGCCCGTTTGCCTCTCCACGCCCCGATAGCCGCTACAGCGAGCGCGACTCGGTCACTGACCTCACAGAGATGGGCCCGCCCAAGACTCCGGTGGGAATCGCTAAGAACGGAAAGGATCTCACTTCGCCGCTGCCCGTGAAAATGGAGCTGCCGCCCGCGGAGGGGCGCGCTGAGAACATCTGA
- Protein Sequence
- MEMRGTQTLNADPASVSDASIIVTAKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAHSAHHIKEEVLPYPSITDGMTVGVPPNVYGSVGCGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLSLPPLQLQSPRLPSPMSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYSERDSVTDLTEMGPPKTPVGIAKNGKDLTSPLPVKMELPPAEGRAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_00922809;
- 80% Identity
- -