Ppol012807.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- bab1
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000025.1:1875752-1888933[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-18 2e-14 53.5 0.0 1 43 131 174 131 176 0.95 2 2 3.3 7.6e+03 -2.8 2.0 6 15 268 277 264 278 0.82
Sequence Information
- Coding Sequence
- ATGGAAAAAATATCCATCGGATACCGCATCGACGCACGCTTAAACAATCAAACGGGGAACAAAAAGACAGTAATGTGGAAATGGATAATGCAGGAGCGGCCATGGCAGGGTGCGGTCACAGTCCGGGCGGGCGTAGCCACAGTTCGAGCGGGCGCTTGGCCGGAGGACGGCGACGGTGACGGACGGTACCGGGCGCCGCCGCCTATACCCTCTGTGTTTACCGCTAAACTGCTCGAGAATTCGCATGCCTGGCTCGGAGCCTCGACATCTTCGATTGCAGCAGATAGCTACCAGTACCAACTACAGTCGATGTGGCAGAAGTGCTGGAACACGAACCAGAGCCTGGTCCACAACTTGCGGTTCCGTGAGCGCGGGCCCCTCAAGTCCTGGCGGCCGGAGACCATGGCCGAGGCGATCTTCTCAGTTCTCAAGGAGGGACTGTCGTTGTCACAGGCGGCTAGGAAGTACGACATACCGTACCCGACCTTCGTACTGTACGCCAACAGGGTGCACAACATGCTCGGCCCCAGCGCCGACGGAGGCGCAGATCTGAGGCCCAAAGGGCGCGGCCGGCCGCAGCGCATCCTGCTGGGCGTATGGCCCGACGAGCACATCCGCGGCGTCATCCGCGCCGTCGTCTTCCGAGACACTCATGCTCACTCCGCTCATCACATCAAGGAGGAGGTCCTTCCTTATCCTTCTATCACGGATGGCATGACCGTGGGGGTACCGCCGAACGCGTATGGATCAGTGGCGTGTGGCAATGGACGCGATGGAGGCGTCTCACCGAATGCCGCCGCCGCCGCCGCAGTGGCCGCCGTAGCTCACGGGCTGCGTCGTCAGATGTGCAACATGGTTGTGGCGGCGCAGAGACCTCCAGATCACCCTCCGCACCTCAGCCTGCCGCCGCTGCCGCTGCAGTCTCCGCGCTTGCCGTCGCCAATGTCCGCCGGACTGGAGTCTCCGCTGTGCTCTCCGCCGCCACCCGGCCACGCTCTGGAGCCGCCGAAGCCGGCTGACCCGTTCCGCCCGTTCGCCTCGCCGCGCCCCGATAGCCGCTACAGCGAACGCGATTCGGTCGCCGACCTTACCGAGATGGGCCCACCTAAGACTCCGGTGGGCATCGCTAAGAACGGAAAGGATCTTGCTTCGCCGCTGCCCGTGAAGATGGAGCCGCCGCCCTCGGAGGCGCGCGCAGAGAACATCTGA
- Protein Sequence
- MEKISIGYRIDARLNNQTGNKKTVMWKWIMQERPWQGAVTVRAGVATVRAGAWPEDGDGDGRYRAPPPIPSVFTAKLLENSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAHSAHHIKEEVLPYPSITDGMTVGVPPNAYGSVACGNGRDGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPPHLSLPPLPLQSPRLPSPMSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYSERDSVADLTEMGPPKTPVGIAKNGKDLASPLPVKMEPPPSEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_00922809;
- 80% Identity
- -