Lmag021988.1
Basic Information
- Insect
- Lordiphosa magnipectinata
- Gene Symbol
- MBD2
- Assembly
- GCA_018904285.1
- Location
- JBAMBO010004042.1:991195-997286[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-23 1.1e-19 70.4 0.0 1 74 9 83 9 86 0.91 2 2 6.4e-06 0.023 15.0 0.0 27 76 174 234 151 235 0.90
Sequence Information
- Coding Sequence
- ATGCAAATGAATCCGAGTTTGACAATCGAACGCAAACGCGTCGATTGCAGTGCTCTGCCCAAGGGTTGGCAACGCGAGGAAGTACGCAAATCGGCCAAtagcaacaacagcaataacaacaacaacaaagtggaTGTCTTCTATTACAGTCCAACAGGCAAAAGAATTGAAAGCAAGCCACAATTAGCTCGTCAATTGGGCAGCGAAATGTTTGACATTGGCAACTTTGATTTTCAAACTGGCAAAATGCTGCAACACCAGCAGCTTCAGCGTCAATTGCCCTCACCCTCGATATCGCTATATCGCTGCAGTGTGATGCCCACGCTGCCCAGTGGAGGAGCAGCGGGCAATCTTAAACGAAAGTATAACAGAGCCCAGGCCCAGGGCAGTAACAATGGCAGCATCAATACACAAACAATGGCATCAGCAGGAGCGTCGGCGAACGCAGCAACCACACCAGTTGGAGCAACTGCCACCTCATCTAGCAATCTACGCCATCAGCAACAATTTGAACTCAGTCGCGCCCTACGCACAGATGTCTCCCTGGTGCCACCCATACGACAAACTGCCTCAATTTTTAAGCAACCTGTTACGGCAATTCGAAATCACAATCAGGATTCCGGCAAAGTTAAACACGATGCCAAACATGGTGCCCAAGAGAAACCGAAACAACTATTCTGGGAAAAGAGGCTGGAACGGTTACGAGCCTGCCACGACAATGGCGAAGAGTTAGATGACATATCACTGCCCAAAACCATACGCACCGTTGGCCCCAATGTTAATGAACAGACTGTCCTGCAATCGGTGGCCACCGCCCTGCATATGCTCAATGCCGGTGTGCATGGCCAGAGCAGCACTAAGGCTGAGTTAACCAAGAATGCGATGGCATTCATGAATCCTGAACAGCCATTGATGCATGCGGTGATCATTTCAGAGGATGATATACGCAAGCAGGAGGACCGTGTGAGTGTGGCGCGACGAAAGCTACAGGATGCGCTGAAAACATGA
- Protein Sequence
- MQMNPSLTIERKRVDCSALPKGWQREEVRKSANSNNSNNNNNKVDVFYYSPTGKRIESKPQLARQLGSEMFDIGNFDFQTGKMLQHQQLQRQLPSPSISLYRCSVMPTLPSGGAAGNLKRKYNRAQAQGSNNGSINTQTMASAGASANAATTPVGATATSSSNLRHQQQFELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHNQDSGKVKHDAKHGAQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVSVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555843; iTF_00483684; iTF_00577775; iTF_00590963; iTF_00501040; iTF_00600312; iTF_00618407; iTF_00919815; iTF_00914499; iTF_00523692; iTF_00917206; iTF_00604088; iTF_00555080; iTF_00915327;
- 90% Identity
- iTF_00914499; iTF_00919815; iTF_00917206;
- 80% Identity
- -