Lclr002629.1
Basic Information
- Insect
- Lordiphosa clarofinis
- Gene Symbol
- MBD2
- Assembly
- GCA_018904275.1
- Location
- JAEIGQ010000156.1:722535-727082[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-23 2e-19 69.0 0.0 1 74 9 83 9 86 0.92 2 2 5.2e-06 0.014 15.1 0.0 27 76 133 193 121 194 0.90
Sequence Information
- Coding Sequence
- ATGCAAATGAATCCGAGTTTGACAATTGAACGCAAACGAGTCGATTGCAGTGCTCTGCCCAAGGGTTGGCAACGCGAGGAAGTACGCAAATCGGCCAATGGCACCAACAGCAACAACAACAACAACAAAGTGGATGTCTTCTATTACAGTCCAACAGGCAAAAGAATTGAAAGCAAGCCACAATTAGCACGTCAATTGGGCAGCGAAATGTTTGACATTGGCAACTTTGATTTTCAAACTGGCAAAATGCTGCAACACCAGCAGCACCAGCGTCAATTGCCCTCACCCTCGATATCGCTATATCGCTGCAGTGTGATGCCCCCGCTGCCCAGCGGAGGAGTAGCGGGCAATCTGAAACGCAATAATCTACGCCATCAACAACAATTTGAACTCAGTCGCGCCCTACGCACAGATGTCTCCCTGGTGCCACCCATACGCCAAACTGCCTCAATTTTTAAGCAACCTGTCACGGCAATTCGTAATCACAATCAGGATTCCGGCAAAGTAAAACACGATGCCAAACACGGTGCCCAAGAGAAACCGAAACAGCTGTTCTGGGAAAAGAGGCTGGAACGATTACGAGCGTGTCACGACAATGGCGAAGAGCTAGATGACATATCACTGCCAAAAACCATACGCACCGTTGGCCCCAATGTCAACGAACAGACTGTCCTGCAATCGGTGGCCACCGCCCTGCATATGCTCAATGCCGGTGTGCATGGCCAGAGCAGTACCAAGGCTGAGTTAACCAAGAATGCGATGGCATTCATGAATCCTGAACAGCCATTGATGCATGCGGTGATCATTTCAGAGGATGATATACGCAAGCAGGAGGACCGTGTGAGTGTGGCGCGACGAAAGCTACAGGATGCGCTGAAAACATGA
- Protein Sequence
- MQMNPSLTIERKRVDCSALPKGWQREEVRKSANGTNSNNNNNKVDVFYYSPTGKRIESKPQLARQLGSEMFDIGNFDFQTGKMLQHQQHQRQLPSPSISLYRCSVMPPLPSGGVAGNLKRNNLRHQQQFELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHNQDSGKVKHDAKHGAQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVSVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00918126;
- 90% Identity
- -
- 80% Identity
- -