Dneo000566.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- MBD2
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000004.1:645939-647639[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-22 4.4e-19 68.0 0.0 1 76 9 86 9 87 0.93 2 2 5.3e-06 0.017 14.8 0.0 26 76 177 238 164 239 0.90
Sequence Information
- Coding Sequence
- ATGCAGATGAATCCGAGCGTAACAATCGAACGCAAACGCGTGGATTGCAGCGCTCTGCCAAAGGGCTGGCAGCGTGAGGAAGTACGCAAGTCGGCCAACAGCAGCAGCGCAGCAAATAATAATAACAACAAAGTGGACGTCTTTTACTACAGTCCCACAGGCAAGCGAATTGAAAACAAACCGCAACTAGCCCGTCAATTGGGAAGTGAAATGTTTGACATTGGAAACTTTGATTTCCAATCGGGCAAAATGGTCCAGCAGCAACAGCAGCAGCGTTCAATGCCATCACCCTCTATATCGCTGTATCGCTGCAGTGTGATGCCTCCACTACCCAGTGGAGGATCTGCCAATGCGCTGAAGCGTAAATATAGTAGAGCCCAGGCACTGGGCCTGCAAGGAATGGAAAAGGAATTCTTTGGCCACGGAAACGAAAAAGATGGGCTTGGCCAAGGATCGGGCTGTACAGTCATCGCTGCATCTAACTCTTCTATCAATATGCGCCAGCAGCAGCAACAGCATTTGGAACTCAGTCGAGCCCTTCGCACAGACGTTTCTCTAGTGCCGCCCATACGACAAACTGCCTCTATTTTCAAACAACCCGTGACAGCCATCAGGAATCATAACCAAGAACCCAACAAGGTGAAACATGATGCCAAGCATGGAGCACAGGAGAAACCGAAGCAATTGTTTTGGGAAAAACGATTGGAGCGGCTGCGTGCTTGTCACGACAATGGTGAAGAGTTGGATGATATAACACTACCCAAAACCATACGCACTGTGGGCCCAAATGTGAATGAGCAAACGGTTCTACAGTCAGTGGCCACCGCCCTGCATATGCTTAATGCCGGCGTACATGGTCAAAGCTCTACCAAGGCTGAGTTAACGAAGAACGCTATGGCCTTTATGAATCCCGAACAACCATTGATGCATGCGGTAATCATTTCCGAGGATGATATACGAAAGCAAGAAGATCGGGTTAGTGTGGCAAGGCGAAAACTCCAAGATGCTCTAAAAACATGA
- Protein Sequence
- MQMNPSVTIERKRVDCSALPKGWQREEVRKSANSSSAANNNNNKVDVFYYSPTGKRIENKPQLARQLGSEMFDIGNFDFQSGKMVQQQQQQRSMPSPSISLYRCSVMPPLPSGGSANALKRKYSRAQALGLQGMEKEFFGHGNEKDGLGQGSGCTVIAASNSSINMRQQQQQHLELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHNQEPNKVKHDAKHGAQEKPKQLFWEKRLERLRACHDNGEELDDITLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVSVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00918126;
- 90% Identity
- iTF_00483684; iTF_00577775; iTF_00590963; iTF_00501040; iTF_00503265; iTF_00612069; iTF_00618407; iTF_00523692; iTF_00600312; iTF_00604088; iTF_00555080;
- 80% Identity
- -