Lnew019659.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- -
- Assembly
- GCA_030264535.1
- Location
- JARJEB010031424.1:2280-6048[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4e-13 4.5e-10 39.4 0.0 1 39 289 328 289 332 0.90 2 4 1.2e-12 1.6e-09 37.6 0.1 1 39 343 381 343 384 0.95 3 4 2.7e-19 3.6e-16 58.9 0.0 1 45 398 443 398 443 0.98 4 4 8.1e-17 1.1e-13 51.0 0.0 1 40 450 490 450 494 0.92
Sequence Information
- Coding Sequence
- ATGCTGTCAAGAGTCAAGTCAGATGTGTGCGTAATGTCGCTACTGAAAACGGCGGACCAATTAAAAATCAAGGGGCTTTGTGATACACCCGACGAACAGGTGAACAACCGAGACAACTCTGCTCCAATTGTGAGTGGCGAATTTCCTAAAATTCGTAGATTATCTTCACCGAAACATCAAAGACAGGATAATTTCGAGAATAAAAAACAGAAGTGCAAAAAGAGCGATAAGTTTGTCTGTAATAAGGAATCAGATGCTTCAGCAGCACCATCAGCGACAACTTCTGCAAGTGACGAACTACATTCACATGGAGAAGAAGCAAAGGAAAACGAAAGAACAATAACTTCAAGTGAGGATGATAAGGGAAGGAAGCGATTGAATACGGAACAGAATATTCTGAACATGAGCAGTAATGCTCTACTAACTGGGCAGttGCTGTTTTCGCAATTTGGCGTTGATAATGAAGATTTCTCCCCTGATCCACCTGCTCCAATGGCAATTCCAGTCGAGCATGTTGATATGCAGGAACACTCCCCTACAAGAACTTTATTAACCAATTCATCGTTACATCGAACTGATCTGtcaaATTCACATTTAAAACATTCAGATATAAAACGAGAGATTAAATTCGAAACTTTGCGTTCATCATACACTGCTGAATCGCTTCTAGATATTGACAGCCACATGTCAGGGCATTCAATGGATAGCCATGACGATCACGATCAAAATCACACAACCATGATGATAACGCCGGAGTTGACCAGTTTAATGCCTCTCGGTACTATTAGTGATGCTAGTACCAAATCCAACGGGCATTCCGAACATTCACAACATTCGAGACATGGCGGCGGTCCAAAAACATGGACCCAAGAAGATATGGAACGAGCACTAAATGCACTGAGAAATCACAACATGAGTTTAACTAAGgCATCATCAACTTATGGTATTCCATCAACTACATTATGGCAGCGAGCACATCGACTGGGCATCGATACACCAAAGAAAGAAGGACCAACAAAATCTTGGACGGAAGAAAGCTTAAATTGCGCACTTGAAGCATTACGTACTGGCACAATATCAGCAAACAAAGCAAGTAAGGCGTATGGAATTCCATCCAGTACATTGTACAAAATTGCACGGCGTGAAGGCATAAGACTAGCAGCACCTTTTAATGCGGCACCAACAACTTGGACTCCTGAAGATTTAGAAAAAGCACTAGAGTCAATACGTTCCGGACAAACATCAGTACAGAGAGCAAGTACCGAATATGGTATTCCTACAGGAACGTTGTATGGTAGATGTAAAAGAGAAGGCATTGAGTTATCTCGTTCAAATCCAACACCTTGGTCAGAAGATGCAATGGGCGAAGCATTGGAGGCAGTGCGACTGGGTCATATGTCAATAAACCAAGCAGCAATTCATTACAACCTTCCATATTCCTCTCTATACGGTCGATTCAAAAGGGGAACTAAGTACGAAACAGATTCTACTGACATCAACGTAGATACTCAATCTCAACATGACGGTCCATCGATGATGATAGATTACAGTAACTCTCACAACACCCAAGTACAATATCACAATCACACAAATAGCTGA
- Protein Sequence
- MLSRVKSDVCVMSLLKTADQLKIKGLCDTPDEQVNNRDNSAPIVSGEFPKIRRLSSPKHQRQDNFENKKQKCKKSDKFVCNKESDASAAPSATTSASDELHSHGEEAKENERTITSSEDDKGRKRLNTEQNILNMSSNALLTGQLLFSQFGVDNEDFSPDPPAPMAIPVEHVDMQEHSPTRTLLTNSSLHRTDLSNSHLKHSDIKREIKFETLRSSYTAESLLDIDSHMSGHSMDSHDDHDQNHTTMMITPELTSLMPLGTISDASTKSNGHSEHSQHSRHGGGPKTWTQEDMERALNALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNCALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGTKYETDSTDINVDTQSQHDGPSMMIDYSNSHNTQVQYHNHTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904018; iTF_00049188; iTF_00048557; iTF_00083823; iTF_00048725; iTF_00084025; iTF_00049370; iTF_00629919; iTF_00629713; iTF_00022272; iTF_00022123; iTF_00631584; iTF_00631418;
- 90% Identity
- -
- 80% Identity
- -