Llae019025.1
Basic Information
- Insect
- Lissagria laeviuscula
- Gene Symbol
- -
- Assembly
- GCA_030264695.1
- Location
- JARJDU010044924.1:369-2927[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-13 5.1e-10 39.1 0.0 1 39 293 332 293 336 0.90 2 4 7.8e-13 1.5e-09 37.6 0.1 1 39 347 385 347 388 0.95 3 4 1.8e-19 3.3e-16 58.9 0.0 1 45 402 447 402 447 0.98 4 4 8.5e-17 1.6e-13 50.3 0.1 1 39 454 493 454 496 0.95
Sequence Information
- Coding Sequence
- ATGTCGCTACTGAAAACGGCAGACCAATTAAAAATCAAGGGGCTCTGCGATACGCCGGACGAGCAAGTGCACAACGGCAGCGGTTGTTCTTCATCTCCGATTGTGAGTGGGGAATATCCGAAATTCCGGAGACTTTCCTCGCCCAAACACCATCAGTATCATCAACGACAGCAGGATAATTACGAAAGTAAGAAACAGAAACAGTGCAGGAAGAACGAGAAATTGTCGTTAGCTACCGGGAGCAAGGAATGTGCAGATGCAGGGACATCATCATCTTCCGTCAATGCTACTAACGTCACTAATGATGATGCACATGGGGAAGATACTAAAGAGAATGACAGAACATTAACTTCGAGTGATGATGATAAAGGAAGGAAGCGATTGAGTGCGGAACAGAATATCCTGAACATGAGCAGTAATGCTCTGCTAACAGGGCAGTTGCTATTCTCGCAATTTGGCGTTGACAGTGAAGACTTCTCACCTGATCCACCTGCCCCAATGGCAATACCAGTTGGTCATGTTGAAATGCAAGAACATTCACCAACAAGGACACTTTTAACGAATTCATCATTGCGGGCGGATTTATCCAGCAACGTTCTTCAAAAAACCTCCGAGattaaaagagaaataaaattcgaaacaCTGCGTTCCTCCTACACAGCTGAATCACTTCTAGACATCGATAGCCATATGTCAGCGCACTCGATGGACAGTCATGATGATCAAGATCCTAATAGCCACACCACAATGATGATCACACCCGAACTCACCAGTTTAATGCCGCTTGGAACAATCAGTGACCACAGCACAAAGTCCAACGGCCATTCGGAACATTCACACAGCTCCTCCAGACATGGCGGAGGTCCAAAAACATGGACACAAGAAGATATGGAACGCGCGTTGGACGCCTTAAGGAATCACAACATGAGCCTAACAAAGGCTTCGTCTACTTATGGCATTCCCTCGACTACCCTATGGCAGAGAGCCCATCGCCTTGGTATCGACACACCAAAGAAAGAAGGACCAACCAAATCCTGGACGGAAGAAAGTCTGAATTGCGCATTGGAAGCATTGCGTACAGGCACAATATCCGCGAATAAAGCCAGTAAAGCCTATGGTATACCTTCTAGTACCTTATATAAAATTGCCAGAAGAGAGGGTATCCGTTTGGCGGCTCCTTTTAACGCAGCACCTACGACATGGACGCCGGAAGACTTGGAGAAAGCTCTGGAGTCGATACGATCAGGACAGACGTCGGTGCAAAGAGCAAGCACCGAGTATGGCATTCCAACGGGGACGTTATATGGGAGGTGTAAGAGGGAAGGGATCGAATTGTCACGATCTAATCCTACGCCTTGGTCTGAGGATGCTATGGGGGAAGCACTGGAGGCGGTGCGTTTAGGACATATGTCTATTAACCAAGCAGCTATACATTATAACCTTCCATATTCGTCCCTGTACGGTAGGTTTAAGAGAGGAGCCAAGTATGATTCCGATTCCACTGATTTAAATGTAGATACTCATTCGCAACATGACGGCCCGTCGATGATGTTGGATTACACAAACTCGCATAATTCCCAAGTACAATATCACAATCATACAAACAGCTGA
- Protein Sequence
- MSLLKTADQLKIKGLCDTPDEQVHNGSGCSSSPIVSGEYPKFRRLSSPKHHQYHQRQQDNYESKKQKQCRKNEKLSLATGSKECADAGTSSSSVNATNVTNDDAHGEDTKENDRTLTSSDDDKGRKRLSAEQNILNMSSNALLTGQLLFSQFGVDSEDFSPDPPAPMAIPVGHVEMQEHSPTRTLLTNSSLRADLSSNVLQKTSEIKREIKFETLRSSYTAESLLDIDSHMSAHSMDSHDDQDPNSHTTMMITPELTSLMPLGTISDHSTKSNGHSEHSHSSSRHGGGPKTWTQEDMERALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNCALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGAKYDSDSTDLNVDTHSQHDGPSMMLDYTNSHNSQVQYHNHTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00902152;
- 90% Identity
- -
- 80% Identity
- -