Eden018776.1
Basic Information
- Insect
- Earota dentata
- Gene Symbol
- lolal
- Assembly
- GCA_027574905.2
- Location
- JAODGB020042640.1:1-6668[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5e-13 5.6e-10 39.0 0.0 1 39 340 379 340 383 0.90 2 4 1e-12 1.6e-09 37.5 0.1 1 39 394 432 394 435 0.95 3 4 2.3e-19 3.7e-16 58.8 0.0 1 45 449 494 449 494 0.98 4 4 1.1e-16 1.8e-13 50.2 0.1 1 39 501 540 501 543 0.95
Sequence Information
- Coding Sequence
- GTGGTGCTGTCGGCATGCTCGTCGTTCTTTCAAAAACTcctcatggaaaatccatgcAAGCATCCGACGATCATCATGCCGCAGGACGTGTGCTATGCGGATCTGAAGTTTATCATCGAGTTCGTCTACAAGGGCGAGATCGACGTCTCGCAGGCGGAGCTACAGTCGCTGCTGAAAACGGCGGACCAATTAAAAATCAAGGGGCTCTGCGACACGCCGGACGACCAGGTCTACATCGGCAACACTCCAGCGACGGCCGCCGGCGGTGAATATCCCAAACTGCGCCGCCTTTCGTCGCCGAAGCATCGGCCGGATTACGGTGAGCAGGGCAGGAAGGGCAAGTGCAAGAGGAGCGAGcgaccgcccgccgccgccgaccaccACCGGGAACCAGATGCTGGCGCTTCCACGCCGCCCGCCACGACTACAACTGCCAGCGAGGATGCGCCGCAACTGCCTGCTGAACACGCCAAAGAGAATGACAGAACAGTGACTGCAAGAGATGATGATAAGGGAAGGAAGCGCTTGAACGCGGAACAGAACCTCCTGAACATGAGCAGTAATGCTCTGCTGACTGGTCAATTGCTATTTTCGCAATTTGGAGTGGATAATGAGGACTTTTCACCCGACCCACCTGCACCGATGGCCATCCCCGTCGAGCACGTAGAGATGCAGGAGCATTCGCCGACAAGGACGTTGTTGACGAATTCGTCTTTACACCGCACGGATTTATCCAATCCGCACTTGAAACACTCCTCAGAGATCAAGCGAGAGATCAAATTCGAAACGCTGCAATCATCGTACAATTCGGACCCACTGCTGGACATTGACAGCCACATGTCGGCGCACTCGATGGACAGCCATGACGGCCATCCGGACAGCCACACGACGATGATGATCACGCCGGAGCTGACGAGTCTAATGCCGCTGGGGACGCTCAGCGATCACAGCATCAAGTCGAACGGGCACTCGGAGCACTCGCACAGCTCGCGGCAGAGCGGCGGGCCGAAGACGTGGACGCAGGAGGACATGGAGCGCGCGTTGGACGCCCTCAGGAATCACAATATGAGTTTGACAAAGgCTTCATCTACTTACGGCATTCCATCCACCACACTCTGGCAGCGCGCACACCGCCTCGGCATCGACACACCAAAGAAAGAAGGCCCGACGAAGTCCTGGACGGAGGAGAGCTTAAACTGCGCGCTGGAGGCGCTGCGCACGGGTACGATATCCGCCAACAAGGCGAGCAAAGCCTACGGCATACCATCCAGCACGCTGTACAAAATCGCCCGGCGAGAGGGTATCCGCCTGGCGGCGCCGttcaacgccgcgccgacgacgtGGACGCCGGAGGACTTGGAGAAGGCGCTGGAGTCGATACGCTCAGGGCAAACTAGTGTTCAACGCGCGAGTACGGAGTATGGTATTCCGACGGGCACGCTCTATGGGCGATGTAAACGCGAGGGAATCGAACTGTCCAGGTCCAATCCGACGCCGTGGTCGGAGGATGCAATGGGCGAGGCGCTAGAGGCGGTGCGTCTTGGCCACATGTCCATCAACCAGGCGGCGATCCACTACAACCTTCCATATTCCTCGCTGTATGGGCGGTTTAAGCGCGGCGCCAAGTACGACTCGGACTCCTCGGACCTCAACGTCGACGCGCACTCGCAGCACGACGGCTCGCAGATGATGCTCGACTACACGAACTCGCATAATTCCCAAGTACAATATCACAATCATACAGATAGCTGA
- Protein Sequence
- VVLSACSSFFQKLLMENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCDTPDDQVYIGNTPATAAGGEYPKLRRLSSPKHRPDYGEQGRKGKCKRSERPPAAADHHREPDAGASTPPATTTTASEDAPQLPAEHAKENDRTVTARDDDKGRKRLNAEQNLLNMSSNALLTGQLLFSQFGVDNEDFSPDPPAPMAIPVEHVEMQEHSPTRTLLTNSSLHRTDLSNPHLKHSSEIKREIKFETLQSSYNSDPLLDIDSHMSAHSMDSHDGHPDSHTTMMITPELTSLMPLGTLSDHSIKSNGHSEHSHSSRQSGGPKTWTQEDMERALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNCALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGAKYDSDSSDLNVDAHSQHDGSQMMLDYTNSHNSQVQYHNHTDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00902152;
- 90% Identity
- iTF_00629919;
- 80% Identity
- iTF_00629919;