Ladu005422.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ligdia adustata
Gene Symbol
-
Assembly
GCA_947049285.1
Location
CAMRIN010000130.1:12878-24907[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0001 0.0071 17.1 0.1 3 23 139 159 138 159 0.97
2 17 9.1e-07 6.5e-05 23.6 1.2 1 23 165 187 165 187 0.99
3 17 5.7e-06 0.0004 21.1 2.7 1 23 193 215 193 215 0.99
4 17 5.2e-06 0.00037 21.2 2.5 1 23 230 252 230 252 0.98
5 17 8.4e-05 0.006 17.4 0.6 1 23 267 289 267 289 0.98
6 17 5.2e-05 0.0037 18.0 3.1 1 23 304 326 304 326 0.98
7 17 0.00019 0.013 16.3 0.0 1 23 372 394 372 394 0.97
8 17 1.1e-05 0.0008 20.1 2.1 1 23 400 422 400 422 0.99
9 17 0.037 2.6 9.1 1.8 1 23 429 451 429 451 0.98
10 17 6.1e-07 4.3e-05 24.1 2.3 1 23 457 479 457 479 0.99
11 17 0.26 18 6.4 1.1 1 23 486 508 486 508 0.98
12 17 2.5e-06 0.00018 22.2 1.5 1 23 514 536 514 536 0.99
13 17 0.0023 0.17 12.8 0.5 1 23 543 565 543 565 0.99
14 17 2.8e-06 0.0002 22.0 1.9 1 23 571 593 571 593 0.98
15 17 0.002 0.14 13.0 0.3 1 20 599 618 599 621 0.93
16 17 3.9e-05 0.0028 18.4 1.4 2 23 628 649 627 649 0.96
17 17 3.6e-06 0.00025 21.7 1.4 1 23 655 678 655 678 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAAATCAAAGCTGAACCGATGAGTTTTTACTCATCGCACCAGCATGTGCACAGCGGCCCCCCAACTATAGTCCGGTCGGAGTCCTCCCATCCCATCATCAACATGAACCCACATCACCAGCTCACGCACCAGCCGCACCAGGAGGACTCCAAAGACAGCCTGATAGTACAACAACAAGTGCAGCACCAACAGGACTTGATGGAACAACACCAGCAGCAGCAGGAGATGCACCAACAACAGGATGACGAGCTGAGCTTCAAAGGGATGGAGGATGAAGGTGTTGACATGGATATGGATGGGAGACAGTGTTCACAGGGTATGGGGGTCGATATGGGATCAGTTCAGACCAAAATGGAATTGCCGAATGGCGGACCAAACACCCCTCGATCAAAACCACAAGCATGCAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCTGGAAACAAGCCCTTTCAATGCACAGTTTGCGACgcggctttctgtcgcaagccgtacttggaggtgcacatgcgtacgcacaccggcgagcgccccttccaatgcgatctgtgcctgaagcgatttacacagaaatccagccttaacacgcacaaacgcgtgcacacagatgagcacatgcgcgccttgatggtgaaggaccggccctacaggtgtgacctctgtcagatgcggttcacgcagagctccagcctcaaccgacacaagaaaatacacacggAGGAACACAGACGCGCGCTGCTGGCTAAGGAACGCCCCTACCAGTGCGGCATCTGCTATGTGCGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggacgccatgggaaaatacacactgCGGGGGTGCGACCCGGAAGCCGCCGGCGGCCCGGGCGTGCAGAGATCGGGCGGGGGAGGCCCGCGGCCTCGCGTCGGCGACGTGCGTtactcgcttttgtgtgtgcactgggcgcagtgcaagggcgcccgttcgcgtgcgggcaatgcccggcggccttcgcccgtcgcccctacctggacattcacatgcgcacgcacacaggcgagcggccgtatcagtgcgacgcgtgtctgaagcgcttcacgcagaagtccagcctcaatattcataagaggacacacacagtccagggcagaccgttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagattcacacgcgcacccacaccggcgagcgaccgtatcaatgcgacatctgcctgaagcgcttcacgcagaaatccagtctcaacattcacaagcggacgcactcagtgcagggccgccccttccagtgcctcgcgtgccccgccgccttcacctgcaagcagtacctggagatacacaaccgcacgcacaccggcgagcggccctaccagtgcgacgtgtgcctcaagagattcgcgcaaaagtctactctcaacatacacaaacgaacgcacacagtgcaagggcggccgtaccaatgcgccgagtgtccggccgcgttcacttgcaagccgtacctggagatacacacgcgcacgcacaccggggaacgccccttcgagtgcgatgtctgttacaagcgctttacgcagaaatccacgctcaacatccacaagcgaatacacaccgGTGAACGTCCTTATGCTTGTGATATCTGTCAGAAACGTTTCGCAGTGAAGAGTTATGTCACAGCTCACAGATGGTCGCACGTGGCGGACAAGCCGCTGAATTGCGATCGATGTTCGATGACGTTCACATCCAAGAGTCAGTTCGCGCTGCACATCCGCACGCATGCGACGGGCCCATGCTACGAGTGCAGTGTCTGTGGACGCACCTTCGTGAGGGACAGCTATCTTATACGACATCACAATCGCGTGCATCGCGAGACTAGCCACACTCTGTCGGCGAACAGTATCGTAAACATCAACAGCGTCGCCACCAACACCACCAGCTCTAACAACGGCAACTATGACTCGCCAGGCGTCTGTGACTTGAGCGTCGCCATCAACACCACAAGCTCGAACAACGGCAACTATGACTCGCCAGGCACCTGTCACTTGAGCTTCGTGCCGATGGTGAACCGGTACATGACGTCACAAGGCACGCAGGTGTCAATGCAGGACTCGCAGAGCAAAATGTCGGCCATGTCGCCGCAATCCATCGCCTCTATTTCGTCCCCCCCTCCCCCGCACACGCCCACGCCTCAGCCCCAGATGTCGAGTCAGATGCACCTCGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHQHVHSGPPTIVRSESSHPIINMNPHHQLTHQPHQEDSKDSLIVQQQVQHQQDLMEQHQQQQEMHQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMELPNGGPNTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYRCDLCQMRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGICYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTAGVRPGSRRRPGRAEIGRGRPAASRRRRALLAFVCALGAVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLACPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCAECPAAFTCKPYLEIHTRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHATGPCYECSVCGRTFVRDSYLIRHHNRVHRETSHTLSANSIVNINSVATNTTSSNNGNYDSPGVCDLSVAINTTSSNNGNYDSPGTCHLSFVPMVNRYMTSQGTQVSMQDSQSKMSAMSPQSIASISSPPPPHTPTPQPQMSSQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00952051; iTF_00952902; iTF_01260328; iTF_00250682; iTF_00125295; iTF_00318265; iTF_00143232; iTF_00666704; iTF_00207176; iTF_00033113;
90% Identity
-
80% Identity
-