Cleg000337.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chesias legatella
Gene Symbol
-
Assembly
GCA_947359385.1
Location
OX375778.1:5081701-5094791[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.3e-05 0.0052 17.2 0.1 3 23 128 148 127 148 0.97
2 18 8.4e-07 4.7e-05 23.6 1.2 1 23 154 176 154 176 0.99
3 18 5.2e-06 0.0003 21.1 2.7 1 23 182 204 182 204 0.99
4 18 3.4e-06 0.00019 21.7 2.6 1 23 219 241 219 241 0.98
5 18 0.00015 0.0085 16.5 0.6 1 23 256 278 256 278 0.98
6 18 4.8e-05 0.0027 18.1 3.1 1 23 293 315 293 315 0.98
7 18 3.3e-07 1.9e-05 24.9 1.5 1 23 330 352 330 352 0.99
8 18 0.00015 0.0083 16.6 2.8 1 23 358 380 358 380 0.98
9 18 1e-06 5.7e-05 23.4 2.3 1 23 386 408 386 408 0.99
10 18 0.034 1.9 9.1 1.8 1 23 415 437 415 437 0.98
11 18 3.2e-06 0.00018 21.8 2.5 1 23 443 465 443 465 0.99
12 18 0.039 2.2 9.0 1.8 1 23 472 494 472 494 0.98
13 18 2.3e-06 0.00013 22.3 1.5 1 23 500 522 500 522 0.99
14 18 0.00044 0.025 15.1 0.7 1 23 529 551 529 551 0.99
15 18 2.5e-06 0.00014 22.1 1.9 1 23 557 579 557 579 0.98
16 18 0.0019 0.11 13.1 0.3 1 20 585 604 585 607 0.93
17 18 3.6e-05 0.002 18.5 1.4 2 23 614 635 613 635 0.96
18 18 3.3e-06 0.00019 21.8 1.4 1 23 641 664 641 664 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAAGCTGAACCTATGAGTTTCTACTCCCATCCTCACGTGACTCATGTGCACGCCGGTCCCCCCACGATAGGCCGCTCCGAGTCAAACCACCATCTCATGCCGCATCACCACCAGGAAGACTCAAAAGACAGCCTGATAATACAACATCAAGTACAACATCAACAAGATCTGATGGAACAACACCAACAACAAGAAATGCAACAAGATGATGAGCTGAGCTTCAAAGGAATGGACGATGAAGGTGTTGATATGGATATGGATGGTCGGCAGTGTTCTCAGGGTATGGGGGTGGATATGGTCTCAGTACAAACAAAAATGGAAGTAAACGGTGGACAGTCTACACCTCGGTCCAAACCACAAGCCTGTAAGGTTTGCGGCAAAGTTCTTTCATCTGCTTCATCATATTACGTCCACATGAAGCTACACTCAGGAAACAAGCCCTTCCAATGCACAGTATGCGACgcagcgttctgccgaaagccatatctagaagttcacatgcgcacgcacacgggcgaacgccccttccagtgcgatctgtgcctaaaacgtttcacgcagaagtccagtctcaacacgcacaaacgggtgcacacagatgagcacttgcgcgcgttgatggcgaaggaccggccctacaagtgtgagctctgtcagatgcggttcacgcagagttccagcctcaacagacacaagaaaatacacacggAGGAGcacagacgcgcgctgctggctaaggatcggccctaccaatgcggcgtctgctttgtgagattcacccagaaatcgagtttgggccggcacggaaaaatacacaccgAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctcggacgtcatgggaaaatacacactgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgtccctatcagtgcgacatctgtgacaagcggttcacgcagaagtccagccttggcactcataaacgtatacacaccggggagcggccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaagatacatacgggcgagcggccctatcagtgcgacgtgtgtctcaagcgcttcacgcagaagtcgagcctcaatatacataagaggacgcatacagTCCagggcagaccgttccagtgcctgtcgtgcccggccgccttcacctgcaagcaatacctggagattcacacacgcacgcacaccggcgagcggccgtatcagtgcgacatctgtatgaagcgcttcacgcagaagtccagtctcaacatccacaagcggacgcactcagtgcaagggcggcccttccagtgcctgcagtgcccggccgccttcacctgcaagcagtacctggagatccacaaccgcacgcacacgggcgagcgcccctaccagtgtgacgtatgtctcaagagattcgcgcaaaagtccacactcaacattcataaacgaacgcacacagtgcaagggcggccgtaccaatgcatggagtgtcccgcggcgttcacttgcaagccgtacctggagatacacatgcgcacgcacaccggcgaacgcccgttcgaatgcgatgtctgttacaaacgcttcacgcagaaatccacgctcaacatccacaagcgaatacacaccgGTGAACGTCCATACGCTTGTGATATTTGTCAAAAGCGTTTTGCTGTAAAGAGCTACGTAACAGCTCACAGATGGTCGCACGTTGCCGATAAGCCACTGAACTGCGATCGATGCTCGATGACGTTCACTTCCAAGTCCCAGTTCGCGCTCCACATCCGCACACACTCGGCCGGGCCCTGCTACGAGTGCAGCGTGTGCGGACGAACATTCGTGCGAGACAGCTATCTTATACGTCATCACAACCGCGTACACCGTGACAATCACAGCAACATGTCCGCAAACAGCATCGGCAATTTGAACAGCGTCGCCAACAACTCGAACAACGGCGGCTTCGACTCGCCCGGAGTCTGTGATTTGAGCTTCGTTCCGATGGTGAACCGTTACATGACATCTCAAGGCACTCAGGTGTCGATGCAAGACTCCCAGAAGATGTCGGCCATGTCGCCACAATCGATTGCATCTATATCATCGCCCCCTCCCCCGCACACGCCTACGCCGCAACCCCAGATGACAGGTCCACTTCACATGGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYSHPHVTHVHAGPPTIGRSESNHHLMPHHHQEDSKDSLIIQHQVQHQQDLMEQHQQQEMQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMVSVQTKMEVNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLRALMAKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDVCLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICMKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGPCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNMSANSIGNLNSVANNSNNGGFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDSQKMSAMSPQSIASISSPPPPHTPTPQPQMTGPLHMAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00896125;
90% Identity
iTF_00737671;
80% Identity
-