Asyr016570.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apeira syringaria
Gene Symbol
-
Assembly
GCA_934045895.1
Location
CAKOGY010000227.1:313994-332007[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 8.5e-05 0.007 17.2 0.1 3 23 136 156 135 156 0.97
2 18 7.7e-07 6.4e-05 23.6 1.2 1 23 162 184 162 184 0.99
3 18 4.8e-06 0.0004 21.1 2.7 1 23 190 212 190 212 0.99
4 18 9.5e-06 0.00079 20.2 2.1 1 23 227 249 227 249 0.98
5 18 0.00021 0.017 16.0 0.5 1 23 264 286 264 286 0.98
6 18 1.9e-05 0.0016 19.2 3.0 1 23 301 323 301 323 0.98
7 18 3e-07 2.5e-05 24.9 1.5 1 23 338 360 338 360 0.99
8 18 0.00014 0.011 16.5 2.8 1 23 366 388 366 388 0.98
9 18 9.6e-06 0.00079 20.2 2.1 1 23 394 416 394 416 0.99
10 18 0.031 2.6 9.1 1.8 1 23 423 445 423 445 0.98
11 18 5.2e-07 4.3e-05 24.2 2.3 1 23 451 473 451 473 0.99
12 18 0.22 18 6.4 1.1 1 23 480 502 480 502 0.98
13 18 2.1e-06 0.00018 22.2 1.5 1 23 508 530 508 530 0.99
14 18 0.0032 0.27 12.2 0.8 1 23 537 559 537 559 0.99
15 18 3.1e-06 0.00026 21.7 2.3 1 23 565 587 565 587 0.98
16 18 0.0017 0.14 13.1 0.3 1 20 593 612 593 615 0.93
17 18 3.3e-05 0.0027 18.5 1.4 2 23 622 643 621 643 0.96
18 18 3e-06 0.00025 21.7 1.4 1 23 649 672 649 672 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAAATCAAAGCTGAGCCGATGAGTTTCTATTCATCACATCAACATATACACGCCGGTCCCCCGACCATAGTCCGGCCTGATTCAAACCATTCGATCATCAACATGAATCAGCACCACTTGTCGCACCAGTCGCACCAGGAGGACTCAAAGGACAGCCTGATAGTACAACACCAAGTGCAACACCAACAAGATCTAATGGAACAACATCAGCAGCAGGAGATGCACCAACAGGATGATGAGCTCAGCTTTAAAGGAATGGAAGATGAAGGTGTCGATATGGATATGGATGGAAGACAATGTTCGCAGGGTATGGGAGTAGACATGGGATCAGTGCAGACAAAAATGGAGGTATCAAATGGAGGACCAAACACACCACGTTCAAAGCCACAAGCCTGTAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCAGGAAACAAGCCTTTTCAATGCACAGTGTGCGACGCAGCCTtttgccgcaagccgtacctggaggtgcacatgcgcacacacacgggcgagcgtccgttccagtgtgacttgtgcctaaagcgttttacgcagaaatccagccttaacacgcacaaacgcgtgcacacagatgagcacatgcacgcgttgatggcgaaggaccggccgtacaactgtgagctctgtcagatgcggttcacgcagagttccagcctcaatcgacacaagaaaatacacacggAGGAGCACAGACGCGCGCTGCTGGCTAAGGAACGCCCCTACCAGTGCGGCGTCTGCTATGTGCGATTCACGCAGAGGTCGAGTCTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGACGGGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtcgagcctgggacgccacgggagaatacacactgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcagtgcgacatctgtgacaagcggttcacgcagaagtccagcctcggcacccataaacgtatacacaccggggagcggccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaagatacatacgggcgagcggccgtatcagtgcgacgcgtgtctcaagcgcttcacgcagaagtccagcctcaatattcataagaggacgcacacagTCCAGGGCAgaccgttccagtgcctgtcgtgtccggccgccttcacctgcaagcaatacctggagatacacacgcgcacccacaccggcgagcgaccgtatcagtgcgacatctgcctgaagcgcttcacgcagaaatccagtctcaacatccacaaacggacgcactcagtgcagggccggcccttccagtgcctcgcgtgtccggccgccttcacctgcaagcagtacctcgagatccacaaccgcacgcacaccggcgagcgcccctaccagtgcgacgtctgtctcaagagattcgcacaaaagtctacactcaacatacacaaacgaacgcacacagtgcaagggcggccgtaccaatgcatggagtgtccggccgcgttcacgtgcaagccctacctggagatacacacgcgcacgcacaccggcgagcggcccttcgagtgctcagtctgttacaagcgattcacgcagaaatccaccctcaacattcacaagagaatacacaccgGTGAACGCCCTTATGCTTGTGATATCTGTCAGAAACGTTTCGCCGTCAAGAGCTATGTCACAGCGCACAGATGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGACCGGTGCTCGATGACGTTCACCTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACGCCGCGGGCCCGTGCTACGAGTGCAGCGTGTGCGGCCGGACCTTCGTGCGGGACAGCTACCTTATACGACATCACAACCGCGTGCACCGCGAGAACAACCACAGCAACATGTCCGCCAGCAGCATCGCCAACATCAGCAGCGTCGCCACCAACACCAACACCACCgggaactacggctcgcccggcgccggcgtctgtgacctgagCTTCGTCCCGATGGTGAATCGGTACATGGCGTCACAGGGCACGCAGGTCTCCATGCAAGACACGCAAAGCAAAATGTCGGCCATGTCGCCGCAATCCATCGCCTCCATTTCATCGCCCCCTCCCCCGCACACGCCGACCCCCCAGCCCCAGATGTCGAGTCAGATGCACCTCGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHQHIHAGPPTIVRPDSNHSIINMNQHHLSHQSHQEDSKDSLIVQHQVQHQQDLMEQHQQQEMHQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGPNTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMHALMAKDRPYNCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCYVRFTQRSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGRIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLACPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHTRTHTGERPFECSVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRHHNRVHRENNHSNMSASSIANISSVATNTNTTGNYGSPGAGVCDLSFVPMVNRYMASQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSSQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00896125;
90% Identity
iTF_01076785;
80% Identity
-