Edef013098.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Erannis defoliaria
Gene Symbol
-
Assembly
GCA_905404285.1
Location
FR990084.1:9638741-9656685[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 9.7e-05 0.0085 17.1 0.1 3 23 138 158 137 158 0.97
2 19 8.8e-07 7.7e-05 23.6 1.2 1 23 164 186 164 186 0.99
3 19 5.5e-06 0.00048 21.1 2.7 1 23 192 214 192 214 0.99
4 19 4.7e-06 0.00042 21.2 2.3 1 23 229 251 229 251 0.98
5 19 8.1e-05 0.0072 17.4 0.6 1 23 266 288 266 288 0.98
6 19 5e-05 0.0044 18.0 3.1 1 23 303 325 303 325 0.98
7 19 3.5e-07 3.1e-05 24.8 1.5 1 23 340 362 340 362 0.99
8 19 0.00015 0.014 16.5 2.8 1 23 368 390 368 390 0.98
9 19 0.00018 0.016 16.3 0.0 1 23 397 419 397 419 0.97
10 19 1.1e-05 0.00096 20.1 2.1 1 23 425 447 425 447 0.99
11 19 0.035 3.1 9.1 1.8 1 23 454 476 454 476 0.98
12 19 5.9e-07 5.2e-05 24.1 2.3 1 23 482 504 482 504 0.99
13 19 0.25 22 6.4 1.1 1 23 511 533 511 533 0.98
14 19 2.4e-06 0.00021 22.2 1.5 1 23 539 561 539 561 0.99
15 19 0.00029 0.026 15.6 0.4 1 23 568 590 568 590 0.99
16 19 2.7e-06 0.00023 22.0 1.9 1 23 596 618 596 618 0.98
17 19 0.0019 0.17 13.0 0.3 1 20 624 643 624 646 0.93
18 19 3.8e-05 0.0033 18.4 1.4 2 23 653 674 652 674 0.96
19 19 3.4e-06 0.0003 21.7 1.4 1 23 680 703 680 703 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAAATCAAAGCTGAACCGATGAGTTTCTACTCGTCGCACCAGCACATACACAGCGGCCCCCCAACCATAGTCCGGTCGGATTCCTCTCATCCTATAATCAACATGAACCCGCACCACCCGTCGCTGTCGCACGCGCCGCACCAGGAAGACTCGAAGGATAGCCTAATAATACAACAACAAGTACAACACCAGGATCTCATGGAACAACATCAGCAGCAGGAAATGCACCAACAACAGGATGATGAGTTAAGCTTTAAAGGAATGGACGATGAAGGTGTCGACATGGATATGGATGGAAGACAGTGTTCACAGGGTATGGGCGTTGACATGGGATCAGTTCAAACTAAAATGGAGTTACCGAATGGAGGACCAAACACACCACGTTCAAAGCCTCAAGCATGCAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCGGGAAACAAGCCTTTCCAATGCACAGTTTGCGACGCAGCTTTCTGCCGTAAGCCGTATTTGGAAGTGCATATGCGCACTCACACAGGCGAACGTCCCTTCCAATGCGATCTATGCTTGAAGCGCTTCACGCAGAAATCCAGCCTTAACACACACAAACGCGTGCACACAGATGAGCACATGCGCGCGTTGATGCTGAAGGACCGGCCCTACACGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGGCACAAGAAAATACACACCGAGGAACACAGACGCGCGCTGCTGGCTAAGGAACGGCCCTACCAATGCGGCATCTGCTATGTGCGATTCACCCAGAAATCGAGTCTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGCCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCATGGGCGGCCGTTCGCGTGCGGGCAATGCCCGGCGGCCTTCGCCCGTCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCGTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATTCATAAGAGGACACACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACCCACACCGGCGAGCGACCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAATCCAGTCTCAACATTCACAAGCGGACGCACTCAGTGCAGGGCCGCCCGTTCCAGTGCCTGGCTTGCCCCGCCGCGTTCACCTGCAAGCAGTATCTGGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAGTCTACTCTCAACATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAGTGCGCGGAGTGTCCTGCCGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGCACGCACACCGGGGAACGCCCCTTCGAGTGCGATGTCTGTTACAAGCGCTTTACGCAGAAATCTACGCTCAACATCCACAAACGAATACACACCGGTGAACGTCCTTATGCTTGTGATATCTGCCAGAAACGTTTCGCCGTGAAGAGTTATGTCACTGCCCACAGATGGTCCCACGTGGCGGACAAGCCGCTGAACTGCGACCGGTGTTCGATGACGTTCACGTCTAAATCTCAATTCGCACTTCACATCCGCACGCACGCTACGGGGCCGTGCTACGAGTGCAGCGTCTGCGGACGCACCTTCGTGCGGGACAGCTACCTTATACGGCATCACAACCGCGTGCACCGCGAGATGAGCCACAGTTTGACTGTGAACAGCATCGCCAATATCAACAGCGTCGCGACCAACACCAACTCCAACAACGGCAACTATGACTCGCCCGGCGTCTGTGACTTAAGTTTCGTGCCCATGGTGAATCGTTATATGACGTCACAAGGCACGCAGGTCTCGATGCAAGACTCGCAGAGCAAAATGTCGGCCATGTCGCCGCAATCCATCGCCTCTATTTCATCGCCTCCTCCCCCGCATACCCCAACGCCCCAGCCCCAGATGTCGGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHQHIHSGPPTIVRSDSSHPIINMNPHHPSLSHAPHQEDSKDSLIIQQQVQHQDLMEQHQQQEMHQQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGSVQTKMELPNGGPNTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMLKDRPYTCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGICYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVHGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLACPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCAECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHATGPCYECSVCGRTFVRDSYLIRHHNRVHREMSHSLTVNSIANINSVATNTNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDSQSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00896125;
90% Identity
iTF_00649330;
80% Identity
-