Bstr008671.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Biston stratarius
Gene Symbol
-
Assembly
GCA_950106695.1
Location
OX467110.1:7779824-7794233[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0001 0.0076 17.1 0.1 3 23 137 157 136 157 0.97
2 19 9.4e-07 6.9e-05 23.6 1.2 1 23 163 185 163 185 0.99
3 19 5.9e-06 0.00043 21.1 2.7 1 23 191 213 191 213 0.99
4 19 3.9e-06 0.00028 21.6 2.6 1 23 228 250 228 250 0.98
5 19 8.7e-05 0.0063 17.4 0.6 1 23 265 287 265 287 0.98
6 19 5.4e-05 0.0039 18.0 3.1 1 23 302 324 302 324 0.98
7 19 3.7e-07 2.7e-05 24.8 1.5 1 23 339 361 339 361 0.99
8 19 0.00017 0.012 16.5 2.8 1 23 367 389 367 389 0.98
9 19 6.5e-05 0.0048 17.8 0.2 1 23 396 418 396 418 0.97
10 19 1.2e-05 0.00085 20.1 2.1 1 23 424 446 424 446 0.99
11 19 0.038 2.8 9.1 1.8 1 23 453 475 453 475 0.98
12 19 6.3e-07 4.6e-05 24.1 2.3 1 23 481 503 481 503 0.99
13 19 0.27 20 6.4 1.1 1 23 510 532 510 532 0.98
14 19 2.6e-06 0.00019 22.2 1.5 1 23 538 560 538 560 0.99
15 19 0.0024 0.18 12.8 0.5 1 23 567 589 567 589 0.99
16 19 2.8e-06 0.00021 22.0 1.9 1 23 595 617 595 617 0.98
17 19 0.0021 0.15 13.0 0.3 1 20 623 642 623 645 0.93
18 19 4e-05 0.0029 18.4 1.4 2 23 652 673 651 673 0.96
19 19 3.7e-06 0.00027 21.7 1.4 1 23 679 702 679 702 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAAATCAAAGCTGAACCGATGAGTTTCTACTCGTCGCATCAGCATGTACATAGTGGCCCCCCAACCATAGTCCGGTCAGATTCCTCCCATCCTATAATCAACATGAACCCACATCACCCATCACTGTCGCATGTGCCGCACCAGGAGGACTCTAAGGACAGCCTAATACAACAACAAGTACAACATCAGGATCTCATGGAACAACATCAGCAACAGGAGATGCACCAACAACAAGATGATGAGttAAGCTTTAAAGGAATGGAGGATGAAGGTGTTGATATGGATATGGATGGAAGACAATGTTCACAGGGTATGGGCGTTGACATGGGATCAGTTCAGACTAAAATGGAAGTGCAGAATGGTGGACCAAACACACCTCGTTCAAAGCCCCAAGCGTGCAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCAGGAAACAAGCCTTTCCAATGCACAGTTTGCGACGCAGCTTTTTGCCGCAAGCCGTACTTGGAAGTGCATATGCGAACGCACACAGGCGAACGGCCGTTCCAATGTGATTTGTGCTTGAAGCGCTTCACGCAGAAATCCAGCCTTAACACACACAAACGCGTGCACACAGATGAACACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGGCACAAGAAAATACACACGGAGGAACACAGACGCGCGCTGCTGGCTAAGGAACGGCCCTACCAGTGCGGCATCTGCTATGTGCGATTCACCCAGAAATCGAGTCTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGCCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCACGGGCGGCCGTTCGCGTGCGGGCATTGCCCGGCGGCCTTCGCCCGTCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCGTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATTCATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACCCACACCGGCGAGCGACCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAATCCAGTCTCAACATTCACAAGCGGACGCACTCAGTGCAGGGCCGCCCGTTCCAGTGCCTCGCCTGCCCCGCAGCCTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGAGAGCGGCCTTACCAGTGTGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCAACTCTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAGTGCGCGGAGTGTCCGGCCGCGTTCACTTGCAAGCCGTACCTGGAGATACACACGCGCACGCACACCGGGGAACGCCCCTTCGAGTGCGATGTCTGTTACAAGCGCTTTACGCAGAAATCCACGCTCAACATCCACAAACGAATACACACCGGTGAACGGCCTTATGCTTGTGATATCTGCCAGAAACGTTTCGCCGTGAAGAGTTATGTCACAGCTCACAGATGGTCTCACGTGGCAGACAAGCCGCTGAACTGTGACCGGTGTTCGATGACGTTCACGTCCAAGTCTCAGTTCGCGCTTCACATCCGCACACACGCTACGGGGCCCTGCTATGAGTGCAGCGTCTGTGGCCGCACTTTCGTTCGGGACAGCTACCTTATACGGCATCACAATCGCGTGCACCGTGAAATGAGTCACAGCCTGTCATCGGGAAGCATCGCCAATATCAACAGCGTCGCGACCAACACTAACTCTAACAACGGCAACTACGACTCGCCCGGCGTCTGCGACTTAAGCTTTGTGCCAATGGTGAATCGTTACATGACGTCACAAGGCACGCAGGTCTCGATGCAAGACTCGCAGAGCAAAATGTCGGCCATGTCACCGCAATCCATCGCCTCTATTTCATCACCTCCTCCCCCGCATACCCCAACGCCGCAGCCCCAACAAATGTCGGGTCAAATGCATCTCGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHQHVHSGPPTIVRSDSSHPIINMNPHHPSLSHVPHQEDSKDSLIQQQVQHQDLMEQHQQQEMHQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVQNGGPNTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGICYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVHGRPFACGHCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLACPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCAECPAAFTCKPYLEIHTRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHATGPCYECSVCGRTFVRDSYLIRHHNRVHREMSHSLSSGSIANINSVATNTNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDSQSKMSAMSPQSIASISSPPPPHTPTPQPQQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00896125;
90% Identity
iTF_00649330;
80% Identity
-