Lpla001551.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- -
- Assembly
- GCA_963971435.1
- Location
- OZ020535.1:1170486-1178462[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 8.5e-06 0.0017 20.2 1.0 1 23 195 217 195 217 0.98 2 32 0.012 2.5 10.3 3.7 1 23 240 263 240 263 0.96 3 32 0.00015 0.029 16.3 0.5 2 23 270 292 269 292 0.96 4 32 0.0042 0.84 11.7 0.1 1 21 312 332 312 333 0.95 5 32 0.0029 0.58 12.2 0.1 2 23 430 451 429 451 0.94 6 32 0.0075 1.5 11.0 0.4 2 23 458 480 457 480 0.91 7 32 0.00012 0.024 16.6 0.1 1 23 550 573 550 573 0.96 8 32 0.015 3 10.0 1.2 1 23 579 602 579 602 0.95 9 32 0.084 17 7.6 0.8 1 23 615 637 615 637 0.97 10 32 4.8e-05 0.0097 17.8 0.9 3 23 682 703 681 703 0.96 11 32 2.1 4.2e+02 3.3 0.4 1 23 736 759 736 759 0.92 12 32 0.9 1.8e+02 4.4 1.3 2 23 766 789 765 789 0.90 13 32 1.2 2.4e+02 4.0 0.0 2 23 798 820 798 820 0.90 14 32 0.025 5 9.3 0.0 2 23 827 849 826 849 0.93 15 32 1.8e-05 0.0035 19.2 1.2 1 23 857 879 857 879 0.98 16 32 0.016 3.3 9.9 1.6 2 23 923 946 922 946 0.95 17 32 0.0057 1.1 11.3 1.0 1 23 949 972 949 972 0.97 18 32 0.00094 0.19 13.8 0.1 2 23 979 1001 978 1001 0.96 19 32 0.0012 0.25 13.4 3.9 1 21 1029 1049 1029 1050 0.95 20 32 0.0037 0.73 11.9 1.8 2 23 1064 1085 1063 1086 0.93 21 32 0.49 97 5.2 1.1 1 23 1089 1112 1089 1112 0.94 22 32 0.014 2.8 10.1 0.9 2 23 1119 1142 1118 1142 0.90 23 32 4.2 8.3e+02 2.3 0.2 2 23 1150 1172 1150 1172 0.94 24 32 4.4 8.8e+02 2.2 0.0 2 23 1179 1201 1178 1201 0.88 25 32 0.31 61 5.9 2.7 2 23 1210 1232 1210 1232 0.96 26 32 0.81 1.6e+02 4.5 0.6 2 23 1238 1260 1237 1260 0.91 27 32 0.023 4.5 9.4 0.1 1 23 1322 1345 1322 1345 0.95 28 32 0.00026 0.052 15.5 1.9 1 21 1373 1393 1373 1394 0.96 29 32 0.44 87 5.4 1.9 2 23 1494 1516 1493 1516 0.94 30 32 1.2 2.5e+02 4.0 0.4 2 23 1523 1545 1522 1545 0.94 31 32 0.95 1.9e+02 4.3 2.5 1 23 1556 1578 1556 1578 0.97 32 32 0.23 46 6.3 0.1 1 19 1582 1600 1582 1603 0.91
Sequence Information
- Coding Sequence
- ATGAAAACGTCGAAAATCCCTGTGTTTCAGATAGAGGAAGATGATCGTTTGCCGAAAGTCCTGTGTTATCGATGCATGTacaatttggaaaatttttacgaCTTCAGAACTGCGTGCGTGAACGCGGCTGCTTGGTTGGAAAGAAATAGGCCCAAGGAAGGCGCGAGCGATGACGGTGCAAATGATAGCGCGCAGTGCAGCGAGATGCACGCGGAGCTTCTCAAGGGAAAGGAAAATATGCCAATACTTATCCCGGAGGCGCCCGTGGTTAATCCGAACGCCGCATTAGGTACACCGCCGAGATTGAATTCTGACGGTGAGGCCGATCCCGAGATCGAAGAGATTCTCGACGCGAGCGAAGGTACGGACGAAGTGCTCGACGACTCGACGGAGGATCGACGATCGGAATACGAATACGAGATGGACATGGAGACGAATCCTAGCGACTTCTTGGAAATGACGCCGATGGTAACCGAGGAAAACGAGGAAGAGTGCGTCGCGAACAATACGAGTGTCCCGACCGGGGGTCAACAACAAGACGCCGCGGCGGTCTTTCCACCTACGTCGCAGCAGCACGAGGTCTATGTATGCTCTCTGTGCAACAAGGCATTTAGCTCCAAGGGTCATCTGTCGTTGCACGCGAGGATTCACGTGGGCGAGGGTGATGTGATCGGCGAAAGAGTCATCACCGATGACCACACCTCATATCAGCGACCGTACCAATGCGATCTCTGTCACAAATCGTATTCTACCGCGAAGCATCGCTGGGGACATGTTTCTACGACACACCGggGACATCCTGCGGTAACGTGTGCGTACTGCTCGCGCATATACTCAACGCGATACAATCTCGAGGAGCATATAAAATCGCGACACGCCGGTCTACCGCCACCCCCGGAATTATCGGTTTCCCTTTCCCGTGCGGAGACTCGTTATCAATGCCAAACGTGTCCGATGGTTTATAAAGATCTGGCAGACTTCAACGCGCATCGTCAGATATGCGAGGAACAACGCACTGATCTATTGGGGCAAACTGACGCGCAGAACAATAAGAGTTTGGTCGATGTGTCCGATATGTCGAGTATTATAGACTCGGACGACGAGAACAAAGACTTTAGGAGTGCCGAGGCTAAACTGGCCAAGAATCCGCAATTGACTATATTGAAACAAGCGTTGACTAAAGGAGACAGTTTAAAACGGAATTACGACGATGATGGTTCAACGTCGAGTTGCAAGACGAGAAAAATGGTCAAGATAgAAGGTGAGAATCCTGAGATAAAAAGGTGGTATTGCGAATATTGTCCGCAAAGTTTTACATCGGTGGACGGTCTAAAGTTGCACGAAGTTAGGCATGATGCCGAGAAGCCGTTTATCTGCATACTATGCAAGAAGGATTTCGTTTTGAAATCTTCATTGATAAGGCACATTACGACGATACACGGCGTCGATCCTACTCCTATTATTGACAGCGACAAGTGTCTAAAGACATCTGTGATGCCTCAGAATTGGAATCGAATGGATGTCAGCGTTTACGAGCAGAGCGAAATAAAGGAACCACCGGAGTTTTCGTCGTCACccgagGTAAATTTGGACAATGATGACAAAGACTCGAAAAACAATCACGAGAATATAGAAATTGAAACAGTATTTATATGTGAGATTTGTACAAGGGACTTTAATGATCGAGCGTCGTTATGGTTGCACATGCGTGCAACGCATAAGGAACTTGCTGCATTCGCCTGTGGAGTGTGTTTAAAGATTTGTTCCGATAATACACAACTCCAGAGTCATCTCTACATGTACCACGGAAAATCCAAGCTTTTAATATCAGAACAAAGAAGGTACAGCTGCACAATATGCGGCAGACAGCATGATTCAAGAAAGAAGCTAATCGCTCATGTCTCGATTCACAATATCGATTCTGGGTTTGATCCTGcaatttttgtacaattaaacagtaattattataacgagAACTTAAACGGTACCGAAGGAAATGAGCAAGTAATGGATTTTGATGGAGAAGACGGCGAGAAAGTCGATTGttacatttgttataaatcttTTCCAAACGAGGATCATCTTATACGACATCAGAGAAATGCGCATAAGTCCGAACAGATAATTCCGTTGGGAGACGCCGCGGGAAGTGGAAACGCTGCGAATGTCAACGGCAATGGTAATAGGGCGCAGTAtcatttgttttttgtttgcGAAATTTGCGGTAGTTCTCATTCGAGTAAATGGGAACGCTGGTTGCATATCAACAACATGCATAGTAATGAATCTTCCATCAAGTGCGAATATGAAAACTGTGGGAAGATATTCGCAACGAAATTGTTGCGCAATGACCATTTTCAGCATCATTTGATTCAAGGCCCGTCGCCGAACACTTGCGAGATATGCGGGAAATTATGGCCTACTCGTGTCGATTACTGGAAACACGTGATGGGCGTCCACGCGGACATGGTGCCCCTAATCTGCGGCGTTTGTCTGAAAGTATTTTCCGACGTGGTGCAGTTAAGTGCCCATGTTAAGGCGAAACATTGGCCACTGACCAGTGGTGATTTCAGCTGTGATATTTGCGGTAGACCGTATTCCAACAAATCGAAGATGTCCCGGCATAGAAAGATCCACGGTTTGGAGGTGGCAGCAGCGGCGGCGGTAGCTGCGGACGTCGCGTGTGATAATAGCAACCTCAACGAGACAACCAACGAATCGATCAAGCTCGAGCACGGCAACAACAGGGCTGTAGACGTCAAATTGAAATGCGAACAGTGCCCCGAGCACAAGTTTACGACTCTGGACAGTTTACGCAATCATCGTCGGGTAGTGCACAATCTCTTCCCGTGCGATCTATGCGTTAAGTATTATGGTAGGACGTCGCACTTGTGGAAACATGTGAACAGGGTACACAAGGGTCACCCGGACGTGACTTGTCCATACTGTGCGAAAACGAGCGCGTCGAGGGATCATCTGGCGGCGCACATCGCGAAGATTCACAGGTACGTACCCGCGATGGGTGGCAAGGACAGTCAGAATTGCGTCGTTTCCAAGTCCTTGAGTGTGGAAGATGGTGTCCTGCATTACTGCGAGAAGTGTAACAAGGGATTCCACAAGCGCTACCTGCTCCGACGTCATATGAAGGGCTGCCAAAATTACCGTAAGGATCCTGGAGCATTGTTGACCCGCTGCCGAGCCTGCGAGAGGATATTCAAGGATCGTGCGAGTCTGCAGAAGCACATCGAGAATCATCACAGCACGTATACCTGCCATTTGTGTAACGAGACCATCACTTCCAAGCTGGGCATCATGACACACAATCGCGTCAATCATATGGATCATCCGGATTTGACATGCGACAATCCGAGCTGTAAGAAACTCTTCCGCACCAAGGAGGATCTCGAGTCTCATCGAAAGGATCACAAGTATCACAGCAACCCGAACGTCTGCGATTTTTGCGGTGACACCGTGGAGAATAAACTCAAGTTGAAGATGCACGTACTATCATTACACCGGAACGAGATCGGCGTGTCTTGCGGCGTCTGTCTCATTCCTATGAAGGATCCGAAAGACTTGAAGAAACACGTCGAGGCGGAGCACAGCAGCGTTCTTTCCAATCCGAATACATGTCAGGTATGTGGCAAGCAGTACGCGTCCAAGTGGAAGGCTTTCGATCACACGAAGAAATGTCACGGAAAAGTTTTTCTCACGTGCAAACAGTGTTTAGCAGTTTTCACGAACGAGAACGATATACGCGATCACTACGAACACGTGCACAACGTTCCAAAGGACCAATTAGCCGTTTTCGAATATAGAATGGACATCGGTGCGAAGAGGGAAGATTACGAGACGCCCGATATTATCGTGAAGGAGGAACCGGACGATCTCGAGTTCGACGAGGAGATGTGCGACGAGAGCTCGAGTGATTCCCGCAAACGCAGACGATCCCCGAATGATACGTACGATTGCGAAATGTGCCCCGAGATCTTCCTCAATTCGGACACACTCGCCAAGCATTATCAGAACGTTCACAACACCGATCCCGTCCGTATGTTCAAGAAGTTTAAGAAGAGCAACGGCGACGGCAAACGTAAAATGAGAAACAGAAACAATTATGAATGCAAGAATTGCAAGAAGCACTTCTCCACCAAGACTCTATTTTGGAATCACATCAACGCGTGCACGCGACGAAACTCGGTATGCAGATTCGACGCCCCGAATAATATCCCGACATCGATTCTGGAGTCGCATCTGAAGAACAATAATCAGATCCAGCGAGAGGAACCGATGCCGCTGACGAACGAATCCAATTTGAACATTCCTGACTTCAATCTGTTCGAGGACATCAATCTGCAATTGTCGGCCCAGAAACCGGTCCCGAATCTCATGCCGTTGCCGCAGAAATCGACGGGTAATGGCAAGTGCTCGCGCAAAGACTCGCGCAAGGTGTACGACGAATCGACGAATACCGAGTGCACGTGCGAGGTCTGCGGCAAACAGTGGCCCGCTAAGAAACACTTGTGGCAACATCTCATTCGCTTCCATCGCGCTGAAGCTGCCGTTACTTGTGGAGTGTGCTTGAAGCTATGCAAATCCTATCAAGACCTGGCCGATCACCTGAAGGCCGAGCACGCCCCTGTCTTGTCGCCGGAGGGCAACAATTTCACGTGCAAGACGTGCGGTAGATATCACAACGCGAGAAGTAAACTGCTCTTGCACATGAGCATTCATATTGGATACTTCCGGTGCGAGAAGTGCCAGCAAGGTTTCGCGAGTGAGGAGAAGCTCGGCGAACACGCGACGAGCTGCAACGGCAAATCGGAATTTGAGGATCATACGGTGACGGCGGATATCGAAGATAACGCGAAAAACGACAACGATGAGAAGGGTAGTTTGATCGCTGACGAAACGTCGGTCATCGAAGAGGAAGTTGAAGAAGCGGATTTCGAATCGGAGGGCGAAGGTAGCAGAAGCATCCAAAACGAAGAGAACAATAGCGAGGAAGATAATTCGGATAGCGATGACTCGGATAGCGGTAGCAATAGTAGTTCGAGCGAGAACGAGGGCGAAGaggacgaagaagaagaagaggaagagcaggaagaagaagaggagaatGAAAACGAGTCTGATACGAGGACTGAACCGGACACGAGAACTACGAGCAGAGCGAGCGGTGACAGTGGATCGTGTAATTCCGAAAGCGACGAATCGGATATGGATGAAGCAGGAGTGCGCACGATGCAGAAGAAAGCGCCGCGATTGGACGATATCGATAGGTTCAGGATACACGACGAAGAGAACTCGTCGGCGATGGAGAAGTACGAGGATCAGAGGACCGCTTCCGTTATCGCAACGACGGATGCAGACCAAAATAAACAGAGTAATTTGAATAACCTACTGATTCCCGGCGCACCTACGAACGTAGACAAATTTAAGGCATTGCGTCTTCAGGAATCCACTGCAGCTACAGCGAGCGATGTAGACTTCTCTAATGATAACGAAAATGATAATGAGGAAGATGACGAAGAGGAAAATAATGAGaacgacgaagaagaagaggggGATGAAGGTGAGGGTGAAGGTGATGGTGATGGTGAAGGTGAAGGTGATGAAGGTGAAGGTGAAGGTGaagatgaaaatgaaaatgaaaatgaaaatgaaaatgaaaatgaagatGAAGATGAAAGTGAAGATGAGGGTACAAGCGAGGCCGAGGCTGAGAGTGGAGAAGATGACGGCGAAAATGACGCTGAAGATGGgagggaagaagaagaagaagaggaagaagaagaagaaggggaGGAAAATGatgaggacgacgacgacggaccGCCTGTGCTGAGTCCGATAATGCCTTTGTTACCAGAAAACGAATCCGAAGAGCACAGCAATACGATGGATCGTACAAGGCATAAGCTTAGTCCGATGATATCGCTGAATATGGATAAATTGATGGAGGGATGCGAGATAACGGAGATAAAACCTGACGCGGAGAACACGGCGGCACCGTCGAACGAGTCCAATTTTTTCGCGGCTAATAACAACGATCTACCCGTGACATGGGACGAGGATGATGAACGCGATTGCGATTCCGATGCCGGAGACGGGGATGTGATGGTGGTGAAGAACGAGGAGTATGCTAAGGGGAATATGAACGATTTGGAGGGCGTCGACTACGAGGAAGATTCCGCGGATGAGAATGTCATGGACGATAGAGACGGTGGTAGTGGAGATCAAGTGCACGAGATACATAGCTTAGACGGGACAGTGTTAATGATGACTAATGACGCGGAAGGTAATCCGATTTTGATACAGCATAACATGTTAGGTATCGATAACGAGGACTCTAATGCCGAAGTGGCGCAGTATATTTACCCAGAGAATACTTACGAGAtcgaagaagaagagggagaggaCGAGGACGATTTTGCGACGCGAAACGAAACCGACGCCACGCAGACGGGTGAAATACAAGATATATCTTATGTTCAGGATATGTCGGAGAACGAGGACAGCACGACGGAGGATGACGTAGAGGAGAACAGTAGTGACGCCCAGAAATAG
- Protein Sequence
- MKTSKIPVFQIEEDDRLPKVLCYRCMYNLENFYDFRTACVNAAAWLERNRPKEGASDDGANDSAQCSEMHAELLKGKENMPILIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDASEGTDEVLDDSTEDRRSEYEYEMDMETNPSDFLEMTPMVTEENEEECVANNTSVPTGGQQQDAAAVFPPTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLEEHIKSRHAGLPPPPELSVSLSRAETRYQCQTCPMVYKDLADFNAHRQICEEQRTDLLGQTDAQNNKSLVDVSDMSSIIDSDDENKDFRSAEAKLAKNPQLTILKQALTKGDSLKRNYDDDGSTSSCKTRKMVKIEGENPEIKRWYCEYCPQSFTSVDGLKLHEVRHDAEKPFICILCKKDFVLKSSLIRHITTIHGVDPTPIIDSDKCLKTSVMPQNWNRMDVSVYEQSEIKEPPEFSSSPEVNLDNDDKDSKNNHENIEIETVFICEICTRDFNDRASLWLHMRATHKELAAFACGVCLKICSDNTQLQSHLYMYHGKSKLLISEQRRYSCTICGRQHDSRKKLIAHVSIHNIDSGFDPAIFVQLNSNYYNENLNGTEGNEQVMDFDGEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSEQIIPLGDAAGSGNAANVNGNGNRAQYHLFFVCEICGSSHSSKWERWLHINNMHSNESSIKCEYENCGKIFATKLLRNDHFQHHLIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADMVPLICGVCLKVFSDVVQLSAHVKAKHWPLTSGDFSCDICGRPYSNKSKMSRHRKIHGLEVAAAAAVAADVACDNSNLNETTNESIKLEHGNNRAVDVKLKCEQCPEHKFTTLDSLRNHRRVVHNLFPCDLCVKYYGRTSHLWKHVNRVHKGHPDVTCPYCAKTSASRDHLAAHIAKIHRYVPAMGGKDSQNCVVSKSLSVEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDNPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTNENDIRDHYEHVHNVPKDQLAVFEYRMDIGAKREDYETPDIIVKEEPDDLEFDEEMCDESSSDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKSNGDGKRKMRNRNNYECKNCKKHFSTKTLFWNHINACTRRNSVCRFDAPNNIPTSILESHLKNNNQIQREEPMPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLPQKSTGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGYFRCEKCQQGFASEEKLGEHATSCNGKSEFEDHTVTADIEDNAKNDNDEKGSLIADETSVIEEEVEEADFESEGEGSRSIQNEENNSEEDNSDSDDSDSGSNSSSSENEGEEDEEEEEEEQEEEEENENESDTRTEPDTRTTSRASGDSGSCNSESDESDMDEAGVRTMQKKAPRLDDIDRFRIHDEENSSAMEKYEDQRTASVIATTDADQNKQSNLNNLLIPGAPTNVDKFKALRLQESTAATASDVDFSNDNENDNEEDDEEENNENDEEEEGDEGEGEGDGDGEGEGDEGEGEGEDENENENENENENEDEDESEDEGTSEAEAESGEDDGENDAEDGREEEEEEEEEEEGEENDEDDDDGPPVLSPIMPLLPENESEEHSNTMDRTRHKLSPMISLNMDKLMEGCEITEIKPDAENTAAPSNESNFFAANNNDLPVTWDEDDERDCDSDAGDGDVMVVKNEEYAKGNMNDLEGVDYEEDSADENVMDDRDGGSGDQVHEIHSLDGTVLMMTNDAEGNPILIQHNMLGIDNEDSNAEVAQYIYPENTYEIEEEEGEDEDDFATRNETDATQTGEIQDISYVQDMSENEDSTTEDDVEENSSDAQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729511; iTF_00730229; iTF_00730942; iTF_00280104; iTF_00264464; iTF_00265177; iTF_01077657; iTF_00280700; iTF_00109983; iTF_01245375;
- 90% Identity
- iTF_01254981;
- 80% Identity
- -