Basic Information

Gene Symbol
-
Assembly
GCA_031304115.1
Location
JAPWJP010002701.1:7680591-7692375[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 7.8e-06 0.0014 20.2 1.0 1 23 257 279 257 279 0.98
2 32 0.011 2.1 10.3 3.7 1 23 302 325 302 325 0.96
3 32 0.00076 0.14 13.9 0.5 2 23 332 354 331 354 0.96
4 32 0.011 2 10.3 0.1 1 21 374 394 374 395 0.95
5 32 0.00062 0.11 14.2 0.2 2 23 494 515 493 515 0.94
6 32 0.0069 1.2 10.9 0.4 2 23 522 544 521 544 0.91
7 32 0.00028 0.051 15.3 0.2 1 23 614 637 614 637 0.96
8 32 0.014 2.5 10.0 1.2 1 23 643 666 643 666 0.95
9 32 0.077 14 7.6 0.8 1 23 679 701 679 701 0.97
10 32 3.2e-05 0.0058 18.3 0.6 3 23 746 767 744 767 0.96
11 32 1.9 3.5e+02 3.2 0.4 1 23 800 823 800 823 0.92
12 32 0.006 1.1 11.1 0.8 2 23 830 853 829 853 0.94
13 32 1.1 2e+02 4.0 0.0 2 23 862 884 862 884 0.90
14 32 0.032 5.9 8.8 0.0 2 23 891 913 890 913 0.93
15 32 1.6e-05 0.003 19.2 1.2 1 23 921 943 921 943 0.98
16 32 0.015 2.7 9.9 1.6 2 23 991 1014 990 1014 0.95
17 32 0.0052 0.95 11.3 1.0 1 23 1017 1040 1017 1040 0.97
18 32 0.00086 0.16 13.8 0.1 2 23 1047 1069 1046 1069 0.96
19 32 0.0011 0.21 13.4 3.9 1 21 1097 1117 1097 1118 0.95
20 32 0.0034 0.61 11.9 1.8 2 23 1132 1153 1131 1154 0.93
21 32 0.45 81 5.2 1.1 1 23 1157 1180 1157 1180 0.94
22 32 0.033 6 8.8 2.1 2 23 1187 1210 1186 1210 0.90
23 32 3.8 6.9e+02 2.3 0.2 2 23 1218 1240 1218 1240 0.94
24 32 4.1 7.4e+02 2.2 0.0 2 23 1247 1269 1246 1269 0.88
25 32 0.28 51 5.9 2.7 2 23 1278 1300 1278 1300 0.96
26 32 1.4 2.6e+02 3.6 0.4 2 23 1306 1328 1305 1328 0.91
27 32 0.021 3.8 9.4 0.1 1 23 1390 1413 1390 1413 0.95
28 32 0.0002 0.035 15.8 0.9 1 21 1440 1460 1440 1461 0.96
29 32 0.4 73 5.4 1.9 2 23 1562 1584 1561 1584 0.94
30 32 1.1 2.1e+02 3.9 0.4 2 23 1591 1613 1590 1613 0.94
31 32 9.5 1.7e+03 1.1 2.8 1 23 1624 1646 1624 1646 0.90
32 32 0.0097 1.8 10.5 0.1 1 19 1650 1668 1650 1671 0.94

Sequence Information

Coding Sequence
atggcgacgacgacgacgacgacgacgacgacgttgacgtcgacgtcgacgttGGCGGCTACAACCAAGGGCGCGACAGCGATGCCGATCGAGCGGAGGAAATCTTATCACGATCTCTGTCGCCTGTGCGCCTCTTACGACAACGTCAGCATGCACATATTCGGCGAGGAAGGCAGAAACCGGCAGCTCGTTGACAAAATTCAGACGTGCCTGCCATTCAAGATAGAGGAAGATGATCGTTTACCGAAAGTTTTATGTTACCGATGCATgtataatttggaaaatttttacgaCTTTAGAACCGCATGCGTGAACGCATCTGCTTGGTTGGAAAGATATAGACCCAAGGAAGGCGCGAGCGATGACGGTGCAAATGATAGTGCGCAGTGCAGCAAGATGCACGCGGAGCTTCTCGAGGGAAAGGAAAATATGCCAGTACTTATCCCGGAGGCGCCCGTAGTCAATCCGAACGATGCATTAGGTACACCACCGAGATTAAATTCCGACGGAGAGGCCGATCCCGAGATCGAAGAGATACTCGATGCGAGCGAAGGTACGGACGAAGTGCTCGATGATTCGACGGAGGATCGACGATCGGAATACGAATACGAGATGGATATGGAGACGAATCCTAGTGACTTCTTAGAAATGACGCCGATGGTAACCGAGGAAAACGAGGAGGAGTGCAGCGCGAACAATACGAGTGCCACGGTCGGTCAACAAGAGGCCGCGACGGTCTTTCCACCTACTTCACAGCAGCACGAGGTCTATGTATGTTCTCTGTGCAACAAGGCATTTAGCTCCAAGGGTCATCTGTCGTTGCATGCGAGAATTCACGTGGGTGAAGGTGATGTGATCGGCGAAAGGGTCATTACTGACGATCATACCTCGTATCAGCGACCGTACCAATGCGATCTCTGTCATAAGTCATATTCTACCGCGAAGCATCGTTGGGGGCACGTTTCTACAACACATCGAGGACATCCTGCAGTAACGTGTGCGTACTGTTCTCGCATATACTCGACGAGGTACAACCTCGACGAACATATAAAATCGCGACACGCTGGTCTACCGCCACCCCCGGAATTATCGGTTTCCCTTTCTCGTGCGGAAACTCGTTATCAATGCCAAACGTGTCCaatgatttataaagatttggCAGATTTCAACGCGCATCGTCAGATATGCATTATGGAACAACGCACTGATCTATTGGGACAAACCGACGCGcagaacaataaaaatttagtcgATATGTCCGACATGTCTAGTATTATAGATTCGGACGATGAGAACAAAGACTTTAGGAGTGCCGAGGCTAAATTGGCTAAGAATCCACAATTGACTATATTAAAACAAGCGTTGACTAAAGGAGACAATCTAAAACGGATTTACGACGATGATGGTTCAACGTCGAGTTTCAAGGCGAGAAAAATGGTCAAGATAgAAGGTGAGACGAATCCTGAGATAAAAAGGTGGTATTGCGAATATTGTCCGCAAAGTTTTACATCGGTGGAGAATCTAAGGTTGCACGAAGTTAGGCATGATGCCGAAAAGCCGTTTATCTGCATACTATGCAAAAAGGATTTCGTTTTGAAGTCTTCGTTGATAAGGCACATTACGACGATACATGGCATTGATCCTACTCCTATCATTGACAGCGACAAGTGTCTAAAGACATCTGCGATGCCTCATAATTGGAACCGAATGGATGTCAGCGTTTACGAACAGAGCGAAATAAAGGAACCACCAGAGTTTTCGTCATCACCTgagATAAATTTGGACAATGatgaaaaagatttgaaaaacAACCACGAGAATGTAGAACTCGAAACAGTATTTATGTGCGAGCTTTGTTCGAGAGACTTTAATGATCGAGCGTCGTTATGGTTGCACATGCGTGCAACGCATAAGGAACGTGCTGCATTCGCCTGTGGAGTGTGCTTAAAGATTTGTTCTGATAATACACAACTCCAGAGTCATCTCTACATGTACCATGGAAAATCTAAGCTTTTAATATCGGAACAAAGAAGGTATAGCTGCACAATATGTGGTAGACAGCATGATTCAAGAAAGAAGCTAATCGCTCACGTCTCGATTCATAATATCGATTCTGGGTTTGATCCtgcaatttttgtacaattaaacagtaattattataacgagAACTTAAACGGTGCTGAAGGAAATGAGCAAATAATGGATTTTGATGGAGAAGACAACGAGAAAATTGATTGTTACATTTGTTACAAATCTTTTCCAAACGAGGATCATCTTATACGACATCAGAGAAATGCGCACAAgTCCGAACAGATAATTCCGTTAGGAGACGCCGCGGGAAGTGGAAACACTCCAAATATCAACGGCAACGGTAATAGGGCGCAGTATCATTTGTTTTTCGTATGTGAGATTTGCGGTAGTTCTCATTCGAGTAAATGGGAACGTTGGTTGCATATCAATAACATGCATAGTAACGAATCTTCCATCAAGTGCGAATGGGAGAACTGTGGGAAGATATTCGCAACGAAATCATTGCGCAATGACCATCTCCAGCATCATTTGATTCAAGGCCCGTCACCGAATACCTGCGAGATATGCGGAAAATTATGGCCTACTCGTGTTGATTATTGGAAACACGTAATGGGCGTTCACGCGGACACAGTGCCCCTAATTTGTGGCGTTTGTTTGAAAGTATTTTCCGACGTGATGCAGTTAAGTGCCCACGTAAAGGCGAAACATTGGCCACTGACCAATGGTGATTTTAGCTGTGATATTTGCGGTAGGCcatattctaataaatctaaaatgtcTCGGCATAGAAAGATCCATGGTTTGGAGGTGGCAGCAGCagcggcggcagcggcggcgaTGGCTGCGGACGTCGCGTGTGATAATAGCAATCTTAACGAGATAACCAACGAATCGGTGAAGCTCGAACACGACAACAACAGGGCCGTagatctcaaattaaaatgcGAACAATGTCCTGAGCACAAATTCACGACTCTGGACAGTTTACGGAATCATCGTCGGGTAGTGCACAATCAATTCCCGTGCGACCTATGCGTTAAATACTATGGTAGGACGTCGCACTTGTGGAAACACGTGAACAGGGTTCACAAGGGTCATGCGGACGTGACTTGTCCATATTGTGCGAAAACGAGCGCGTCGAGGGATCATCTGGCGGCGCACATCGCGAAGATTCATAGGTACGTACCCACAATGGGTGGCAGAGACAATCAGAACTGCGTCGTTTCCAAGTCCTTGAATATAGAAGATGGTGATCTGCATTATTGTGAGAAGTGTAATAAAGGATTCCACAAGCGTTACCTACTCCGACGTCATATGAAGGGCTGTCAAAACTACCGTAAAGATCCTGGAGCATTGTTGACCCGCTGCCGAGCCTGCGAGAGGATATTCAAGGATCGTGCGAGTCTGCAGAAGCACATCGAGAATCATCACAGCACATATACCTGTCATTTGTGTAATGAGACTATCACCTCCAAACTGGGAATCATGACACACAATCGCGTTAATCATATGGATCACCCGGATTTGACGTGCGACCATCCGAGCTGTAAGAAACTTTTCCGCACCAAAGAAGACCTTGAGTCTCATCGAAAGGATCACAAATATCACAGCAACCCGAACGTTTGCGATTTCTGCGGTGATACCGTGGAGAATAAACTAAAGCTAAAGATGCACGTGCTATCGTTGCACCGAAACGAAATTGGTGTGTCCTGTGGCGTCTGTCTTATTCCTATGAAGGATCCAAAAGATTTGAAGAAACATGTCGAAGCGGAACATAGTAGCGTTCTTTCCAATCCGAATACGTGTCAGGTATGTGGCAAGCAGTATGCGTCCAAATGGAAGGCTTTCGATCACACGAAGAAATGTCATGGAAAAGTTTTTCTCACGTGTAAACAGTGTTTAGCAGTTTTCACGGACGAGAACGCTATACGCGATCACTACGAACATGTGCACAATGTTCCAAAGGACCAATTAGCTGTTTTCGAATATAGAATGGACATTGGGGCGAAGAGGGAAGATTACGAGACGCCCGATATCATCGTGAAAGAAGAACCGGATGATATTGAGTTCGACGAGGAGATGTGCGATGAAAGTTCGAATGATTCTCGCAAACGCAGACGATCGCCGAACGATACGTACGATTGTGAAATGTGTCCCGAGATCTTTCTCAATTCGGACACACTCGCCAAGCATTATCAAAATGTTCACAATACCGATCCCATCCGTATGTTCAAGAAGTTCAAGAAAAATGGCGACGGCAAGCGAAGAATGAGAAATAGAAACAACTACGAGTGCAAGAATTGCAAGAAACAGTTCTCCACCAAGACCTTATTCTGGAATCACATCAACGCGTGCACGCGACGAAACTCGGTATGCAGATTCGACGTTCCGAATAATATCTCGACATCGATTCTGGAGTCGCATCTGAAAAACAATAACCAGATTCAACGAGAAGAACAGATACCACTGACGAATGAATCCAATTTGAACATTCCTGACTTCAATCTGTTTGAGGGCATTAATCTGCAATTGTCGGCCCAGAAACCGGTGCCGAATCTCATGCCGTTGTCGCAGGTAAAGTCGGCGGGTAATGGCAAATGCTCGCGCAAAGATTCACGTAAAGTGTATGACGAGTCGACCAATACCGAATGCACGTGCGAGGTTTGCGGCAAACAGTGGCCCGCTAAAAAGCATTTGTGGCAACATTTGATTCGCTTTCATCGTGCCGAGGCCGCTGTTACCTGCGGTGTATGCTTAAAACTATGCAAATCCTATCAAGACCTGGCCGATCATCTAAAAGCCGAGCATGCTCCTGTTTTGTCGCCGGAGGGCAACAATTTCACGTGTAAGACGTGCGGCAGATATCACAATGCGAGAAGTAAACTACTGCTACACAAGAGCATCCACATCAAGTACTTCCGGTGTGAAAAGTGTCAGCAGGATTTCGCGAATGAGGAAAATCTTGCCGAGCATGCAACCAGCTGCAATGGCAAGTCGGAATTTGAAGATCACGCAGCAACAGCCGATATTGAAGATAGCACGAAAAATGACAATGATGAGAAGGGCAGTTTGATCGCCGACGAAACGTCGGTCATCGAAGAGGAAGTTGAAGAAGCGGATTTTGAATCGGAGAACGAAGGTAGCAGAAGCATTCAaaacgaagaaaataatagCGAGGAAGACAATTCGGATAGCGATGACTCGGATAGCGGTAGCAGTAGTAGTTCGAGTGAAAACGAAGGGGAAGGTGAAGGTGAAGgtgaagaggaagaggaagaagaagaggaggaagaggagaacgAAAATGAAAACGAGTCTGATATAAAGACTGAACCGGACACGAGAACCTCGAGTAGGATGAGCGGTGACAGTGAGTCGTGTAATTCCGAAAGCGATGAATCGAACGAAGCAGGAGTGCGCGCGATGCAGAAGAAAGCATCGCAATTGAATGATGTCGACGAGTTTAGAATACTTAGCGAAGAGGCAATGAAAAAGTATGTCAAGGATCAAAATACCGCTTCCGTTAACGCGACGACTGGTGGAGACCAAACTAAACAGAGTAACTTGAATAACTTGGTGATTTCTGGCGCATCTGCGAACGTAAAACAATTTAAGACATTTCATCTCCAGGAATCCACTGCAGCTACGACAAGTGATGTAGATTTCTCTAATGAAAATGATAACGAGGAAGATGATGACgaggaaaataatgaaaacgaCGAAGAAGGAGAGGGCGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGtgaagacgaagacgaagacgaagatgaagacgaagacgaagacgacgacgatggaCCGCCTGTATTGAGCCCGATAATGCCTTTGTTACCAGAAAACGAATCCGAAGAGCACAGCAATACGATGGACCGAACTAGGCATAAACTTAGTCCGATGGTATCGCTGAATATGGACAAATTAATGGAGGGATGCGAGATAACGGAGATTAAAAATGACGCGGAAAACTCGGCAGCACCGTCAAACGCGTCCAATTTCTTCGGAGGTAATAACAACGATTTACCCGTGACATGGGACGAGGATGACGATCGCGATTGTGAATCCGATGTCAAAGATAGAGATTTGATGGTGGTGAAGAACGAAGAGTTCGAAAGGGAATATGTCAAGAGGAATATGAACGACTTGGAAGGCGACGACTATGAAGAGGATTCTGCAAACGAGAATGTTATGGACGATAGAGATGGTGGTGGAGACCAAGTGCATGAGATACATAGTCTAGACGGGACAGTGTTAATGATGACTAATGACGCGGAAGGTAATCCAATTTTGATAGAACATAACATGTTAGATATCGATAACGAGGACTCTAACGCCGAGGTGGCGCAATATATTTACCCAGACAATGCTTACGAGATccaggaagaggaagaggacgaAGAGGATTTTGCGACGCGAAGCGAAACCGATGCTATGCAGACGGATGAGATACAAGGTATGTCTTATGTTCAGGACATGTCGGAGAACGACGACAGCACGGGGGATAATGTAGAGGAGGACAGTAATGACGCCCAGAAATAG
Protein Sequence
MATTTTTTTTTLTSTSTLAATTKGATAMPIERRKSYHDLCRLCASYDNVSMHIFGEEGRNRQLVDKIQTCLPFKIEEDDRLPKVLCYRCMYNLENFYDFRTACVNASAWLERYRPKEGASDDGANDSAQCSKMHAELLEGKENMPVLIPEAPVVNPNDALGTPPRLNSDGEADPEIEEILDASEGTDEVLDDSTEDRRSEYEYEMDMETNPSDFLEMTPMVTEENEEECSANNTSATVGQQEAATVFPPTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVSLSRAETRYQCQTCPMIYKDLADFNAHRQICIMEQRTDLLGQTDAQNNKNLVDMSDMSSIIDSDDENKDFRSAEAKLAKNPQLTILKQALTKGDNLKRIYDDDGSTSSFKARKMVKIEGETNPEIKRWYCEYCPQSFTSVENLRLHEVRHDAEKPFICILCKKDFVLKSSLIRHITTIHGIDPTPIIDSDKCLKTSAMPHNWNRMDVSVYEQSEIKEPPEFSSSPEINLDNDEKDLKNNHENVELETVFMCELCSRDFNDRASLWLHMRATHKERAAFACGVCLKICSDNTQLQSHLYMYHGKSKLLISEQRRYSCTICGRQHDSRKKLIAHVSIHNIDSGFDPAIFVQLNSNYYNENLNGAEGNEQIMDFDGEDNEKIDCYICYKSFPNEDHLIRHQRNAHKSEQIIPLGDAAGSGNTPNINGNGNRAQYHLFFVCEICGSSHSSKWERWLHINNMHSNESSIKCEWENCGKIFATKSLRNDHLQHHLIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEVAAAAAAAAAMAADVACDNSNLNEITNESVKLEHDNNRAVDLKLKCEQCPEHKFTTLDSLRNHRRVVHNQFPCDLCVKYYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRYVPTMGGRDNQNCVVSKSLNIEDGDLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENAIRDHYEHVHNVPKDQLAVFEYRMDIGAKREDYETPDIIVKEEPDDIEFDEEMCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPIRMFKKFKKNGDGKRRMRNRNNYECKNCKKQFSTKTLFWNHINACTRRNSVCRFDVPNNISTSILESHLKNNNQIQREEQIPLTNESNLNIPDFNLFEGINLQLSAQKPVPNLMPLSQVKSAGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHKSIHIKYFRCEKCQQDFANEENLAEHATSCNGKSEFEDHAATADIEDSTKNDNDEKGSLIADETSVIEEEVEEADFESENEGSRSIQNEENNSEEDNSDSDDSDSGSSSSSSENEGEGEGEGEEEEEEEEEEEENENENESDIKTEPDTRTSSRMSGDSESCNSESDESNEAGVRAMQKKASQLNDVDEFRILSEEAMKKYVKDQNTASVNATTGGDQTKQSNLNNLVISGASANVKQFKTFHLQESTAATTSDVDFSNENDNEEDDDEENNENDEEGEGGEGEGEGEGEGEGEGEGEGEGEGEDEDEDEDEDEDEDDDDGPPVLSPIMPLLPENESEEHSNTMDRTRHKLSPMVSLNMDKLMEGCEITEIKNDAENSAAPSNASNFFGGNNNDLPVTWDEDDDRDCESDVKDRDLMVVKNEEFEREYVKRNMNDLEGDDYEEDSANENVMDDRDGGGDQVHEIHSLDGTVLMMTNDAEGNPILIEHNMLDIDNEDSNAEVAQYIYPDNAYEIQEEEEDEEDFATRSETDAMQTDEIQGMSYVQDMSENDDSTGDNVEEDSNDAQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00869056;
90% Identity
iTF_00729511;
80% Identity
-