Pmex020018.1
Basic Information
- Insect
- Polyergus mexicanus
- Gene Symbol
- -
- Assembly
- GCA_030449975.1
- Location
- JAUDSZ010000011.1:13747-23888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 8.6e-06 0.0015 20.2 1.0 1 23 257 279 257 279 0.98 2 32 0.012 2.2 10.2 3.7 1 23 302 325 302 325 0.96 3 32 0.00084 0.15 13.9 0.5 2 23 332 354 331 354 0.96 4 32 0.012 2.1 10.3 0.1 1 21 374 394 374 395 0.95 5 32 0.0004 0.07 14.9 0.2 2 23 494 515 493 515 0.94 6 32 0.0075 1.3 10.9 0.4 2 23 522 544 521 544 0.91 7 32 0.00012 0.021 16.6 0.1 1 23 614 637 614 637 0.96 8 32 0.011 1.9 10.4 1.1 1 23 643 666 643 666 0.95 9 32 0.085 15 7.6 0.8 1 23 679 701 679 701 0.97 10 32 4.9e-05 0.0085 17.8 0.9 3 23 746 767 745 767 0.96 11 32 2.1 3.7e+02 3.2 0.4 1 23 800 823 800 823 0.92 12 32 0.0066 1.2 11.1 0.8 2 23 830 853 829 853 0.94 13 32 1.2 2.2e+02 3.9 0.0 2 23 862 884 862 884 0.90 14 32 0.025 4.4 9.2 0.0 2 23 891 913 890 913 0.93 15 32 1.8e-05 0.0031 19.2 1.2 1 23 921 943 921 943 0.98 16 32 1.9 3.2e+02 3.4 1.5 2 23 985 1008 984 1008 0.95 17 32 0.0057 1 11.3 1.0 1 23 1011 1034 1011 1034 0.97 18 32 0.00094 0.16 13.7 0.1 2 23 1041 1063 1040 1063 0.95 19 32 0.0013 0.22 13.4 3.9 1 21 1091 1111 1091 1112 0.95 20 32 0.0037 0.64 11.9 1.8 2 23 1126 1147 1125 1148 0.93 21 32 0.49 86 5.2 1.1 1 23 1151 1174 1151 1174 0.94 22 32 0.036 6.3 8.8 2.1 2 23 1181 1204 1180 1204 0.90 23 32 4.2 7.3e+02 2.3 0.2 2 23 1212 1234 1212 1234 0.94 24 32 4.5 7.8e+02 2.2 0.0 2 23 1241 1263 1240 1263 0.88 25 32 0.31 54 5.8 2.7 2 23 1272 1294 1272 1294 0.96 26 32 1.6 2.7e+02 3.6 0.4 2 23 1300 1322 1299 1322 0.91 27 32 0.023 4 9.4 0.1 1 23 1383 1406 1383 1406 0.95 28 32 0.00021 0.037 15.8 0.9 1 21 1434 1454 1434 1455 0.96 29 32 0.44 77 5.4 1.9 2 23 1556 1578 1555 1578 0.94 30 32 1.3 2.2e+02 3.9 0.4 2 23 1585 1607 1584 1607 0.94 31 32 0.95 1.7e+02 4.3 2.5 1 23 1618 1640 1618 1640 0.97 32 32 0.28 48 6.0 0.1 1 19 1644 1662 1644 1664 0.92
Sequence Information
- Coding Sequence
- ATGGCGACGATATCGACAACGACGACGCCGACATCGACGTCGACATCAACGTTGGCGGCTACAACGAAGGACACGATGGCGATGCCGATAGAGCGAAGAAAATCTTATCATGATCTCTGTCGCCTGTGTGCCTCTTACGACAACGTTAGCATGCACATATTCGGCCAGGAAGGCAGAAACCGGCAGCTCGTTGACAAAATTCAGACATGCCTGCCGTTCAAGATAGAGGAAGATGATCGTTTGCCGAAAGTCCTGTGTTATCGATGCATGTAtaatttggaaaatttttacGACTTCAGAACCGCATGCGTGAACGCATCTGCTTGGTTGGAAAGAAATAGACCCAAGGAAGGCGTGAACGATGACGGTGCAAATGATAGCGCGCAGTGCAGCGAGATGCATACGGAGCTTCTCaagggaaaagaaaatatgcCAATACTTATCCCGGAGGCACCCGTGGTCAATCCGAACGCCGCATTAGGTACACCACCGAGATTGAATTCAGACGGAGAGGCCGATCCAGAGATCGAAGAGATTCTCGATGCGAGCGAAGGTACGGACGAAGTGCTCGATGATTCGACGGAGGATCGACGGTCGGAATACGAATACGAGATGGACATGGAGACGAATCCTAGCGACTTTTTAGAAATGACGCCGATGGTAACTGAAGAAAACGAGGAGGAATACGGTGCAAATAATACGAGTGCCGCGACTGGTCAACAAGAAGCCGCGACGGTCATTCCACCTACTTCGCAGCAGCACGAGGTCTATGTATGTTCTCTATGCAACAAGGCATTTAGCTCCAAGGGTCATCTATCGTTGCACGCGAGAATTCACGTCGGTGAGGGTGATGTGATCGGTGAAAGGGTTATTACTGACGATCATACTTCGTATCAGCGACCGTATCAATGCGATCTCTGTCATAAGTCGTATTCTACCGCGAAGCATCGCTGGGGACACGTTTCTACGACACATCGGGGACATCCTGCTGTAACATGTGCGTACTGCTCGCGCATATATTCGACGCGGTACAACCTCGACGAGCATATAAAATCGCGTCACGCCGGTCTACCACCACCCCCGGAATTATCAGTTTCCCTTTCCCGCGCGGAGACTCGTTATCAATGCCAAACGTGTCCGATGATTTATAAAGATTTGGCAGATTTCAACGCGCATCGTCAGATATGCATTGAGGAACAACGCACTGATCTATTGGGGCAAACCGACGCGCAGAACAATAAGAGTTTAGTCGATATGTCCGACATGTCGAGTATTATAGACTCTGACGACGAGAACAAAGACTTTAGGAGTGCCGAGGCTAAACTGGCCAAGAATCCGCAATTGACTATATTGAAACAAGCGTTGACTAAAGGTGACACTTTAAAAAGGATTTACGATGATGATGGTTCAACGTTGAGTTGCAAGGCGAGAAAAATGGTCAAGATAGAAGGTGAGACGAATCCTGAGATAAAAAGGTGGTATTGCGAATATTGTCCGCAAAGTTTTACATCGGTGGACAATCTAAAGTTGCACGAAGTCAGGCATGATGCCGAGAAACCGTTTATCTGCATACTATGCAAGAAGGATTTCGTTTTGAAATCTTCATTGATAAGGCACATTACGACAATACACGGCATTGATCCTACTCCTATCATTGACAGTGACAAGTGTCTAAAGACATCTGTGATGCCTCAGAATTGGAATCGAATGGATGTCAGCGTTTACGAGCAGAACGATATAAAGGAACCACCAGAATTTTCGTCATCACCCGagACAAATTTGGACAATGATGAGAAAGATTTGAAAAACAACCACGAGAATATAGAAATCGAAACAGTATTTATATGTGAGATTTGTACGAGGGACTTTAATGATAGAGCGTCGTTATGGTTACATATGCGTGCAACACATAAGGAACTTGCTGCATATGCCTGTGGAGTATGCTTAAAGATTTGTTCCGATAATACACAACTCCAGAGTCATCTCTACATGTATCACGGAAAATCCAAGCTTTTAATATCGGAACAAAGAAGGTACAGTTGCACAATATGTGGCAGGCAACACGATTCAAGAAAGAAGCTAATAGCTCATGTCTCTATACACAATATCGATTCTGGGTTTGATCCTGCAATTTTTGTACAGTTAAACAGTAATTATTACAACGAGAATTTAAACGGTACCGAAGTAAATGAACAAGTAATGGATTTTGATGGAGAAGACGGCGAGAAAGTCGATTGTTACATTTGTTACAAATCTTTTCCAAACGAGGATcatcttatacgacatcagaGAAATGCGCATAAGTCCGAACAAATAATTCCATTAGGAGACGCCGCCGGAAGTGGAAACGCTCCGAATATCAACGGCAACGGTAATAGGGCACAGTAtcatttgttttttgtttGTGAAATTTGCGGTAGTTCTCATTCGAGTAAATGGGAACGTTGGTTGCATATCAACAATATGCATAGTAACGAATCTTCCATCAAGTGCGAATGGGAAAACTGTGGAAAAATATTCGCCACAAAATCACTGCGCAATGATCATCTCCAGCATCATTTGATCCAAGGCCCGTCGCCGAATACGTGCGAGATATGCGGTAAATTATGGCCTACTCGTGTCGATTACTGGAAACACGTGATGGGTGTTCACGCGGACACGGTACCCCTGATCTGCGGCGTTTGTCTGAAAGTGTTTTCCGACGTGGTGCAGTTAAGTGCCCACGTAAAGGCGAAACATTGGCCACTGACCAATGGTGATTTCAGCTGTGATATTTGCGGTAGGCCATATTCCAATAAATCCAAGATGTCCCGGCATAGAAAGATCCACGGTTTGGAAATGACAGCGGCGGTGGCTGCGGATGTCTCATGTGATAATAGCAACCACAATGACACAACCAACGAATTGGTGAAACTCGAGCACGGCAATAACAGGGCCGTagatttcaaattaaaatgcgAACAATGCCCCGAGCACAAGTTCACGACTCTGGATATTTTACGCAATCATCGTCGGGTAATGCACAATCTCTTTCCGTGCGACCTATGCGTTAAGTACTATGGTAGGACATCGCATTTATGGAAACACGTGAACAGAGTACACAAGGGTCACGCGGATGTGACTTGTCCATACTGCGCGAAAACGAGCGCGTCGAGGGATCATCTCGCGGCGCACATCGCGAAGATTCACAGATACGTGCCCACGATGGGTGGCAAGGATAATCAGAACTGTATTGTTTCCAAGTCCTTGAATATGGAAGATGGTGTCCTGCATTACTGCGAGAAGTGTAACAAGGGATTTCATAAGCGCTATCTACTCCGACGTCATATGAAGGGCTGTCAAAACTACCGTAAGGATCCTGGAGCACTATTGACCCGCTGCCGAGCCTGCGAGAGGATATTCAAGGATCGTGCAAGTCTACAAAAGCACATCGAAAATCACCACAGCACATATACCTGCCATTTGTGTAACGAGACCATTACGTCCAAACTGGGCATCATGACGCACAATCGCGTCAATCATATGGATCACCCAGATTTGACATGCGATCATCCGAGCTGTAAAAAGCTTTTTCGCACCAAGGAGGATCTCGAGTCTCATCGAAAGGATCACAAATATCACAGCAATCCGAATGTCTGCGATTTCTGCGGTGACACCGTggagaataaattaaaattaaagatgcACGTGCTATCGTTACATCGGAACGAGATCGGTGTGTCCTGCGGCGTTTGTCTCATTCCTATGAAGGATCCGAAAGATTTGAAGAAACACGTCGAAGCGGAACACAGTAGCGTTCTTTCCAATCCGAATACATGTCAGGTATGTGGCAAGCAGTATGCATCCAAGTGGAAGGCTTTTGACCACACGAAAAAGTGTCATGGAAAAGTTTTCCTCACGTGCAAACAATGTTTAGCAGTTTTCACGGATGAGAACGCTATACGCGATCACTACGAACATGTACATAACGTTCCAAAGGATCAATTAGCCGTTTTCGAATATAGAATGGACATCGGTGCGAAGAGGGAAGATTACGAGACGCCTGATATTATCGTGAAAGAAGAACCGGACGATCTTGAATTCGACGAGATGTGCGATGAAAGTTCGAGCGATTCCCGCAAACGCAGACGATCGCCGAACGATACGTACGATTGTGAAATGTGTCCCGAGATCTTTCTCAATTCGGATACACTTGCCAAACATTATCAGAACGTTCACAACACCGATCCCGTCCGTATGtttaaaaagtttaagaaGAACAACGGCGATGGTAAACGTAGAATGAGAAACAGAAACAATTACGAATGCAAGAATTGCAAAAAGCAGTTCTCCACTAAGACCTTATTTTGGAATCACATCAATGCGTGCACGCGACGAAACTCGGTATGCAGATTTGATGTCCCAAATAATATCTCGACATCGATTTTGGAGTCGCACTTGAAGAATAATAATCAGATTCAGCGAGAAGAACCAGTATCGCTAATGAACGAATCCAATTTGAACATTCCCGATTTTAATCTGTTCGAGGACATCAATTTACAATTGTCAGCCCAGAAACCGGTGCCGAATCTCATGCCGTTGTCGCAGGTAAAATCGACAGGTAATGGCAAATGCTCGCGCAAAGACTCGCGCAAGGTGTACGACGAATCGACCAATACTGAGTGCACATGCGAGGTCTGCGGCAAACAGTGGCCCGCTAAAAAGCACTTGTGGCAACACTTGATTCGCTTTCATCGTGCCGAAGCCGCCGTTACCTGTGGTGTATGCTTGAAACTATGCAAATCCTATCAAGACCTAGCCGATCACCTGAAGGCGGAGCACGCCCCTGTTTTATCGCCGGAGGGCAACAATTTCACGTGCAAGACATGCGGCAGATATCACAATGCGAGAAGTAAACTGCTGCTACATATGAGCATCCATATCGGATACTTTCGATGCGAGAAATGTCAGCAGGGTTTCGCGAGTGAAGAGAAACTCGGCGAGCACGCGACGAACTGCAACGGCAAGTCGGAATTTGAGAATCATGCAGTAACGGCGGATATCGAAGATAACGCGAAAAACGACAATGATGAAAAGGGCAGTTTAATCGCTGACGAAACGTCGGTCATCGAAGAGGAAGTTGAAGAAGCTGATTTCGAATCGGAAGGCGAGGGTAGTAGAGACATCCAAAATGAAGAAAACAATAGCGAAGAAGACAATTCGGATGGCGATGACTCGGATAGCGATAGCAATAGCAGTTCGAGTGAGAATGAAGGccaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaggggaggaagaggaagaggaaggggaagaggaagaggagaaCGAAAACGAAAATGAGTCTGATACAAGGACTGAGCCGGACACAAGAACCTCGAGCAGGGCGAGCGGTGACAGTGAGTCGTGTAATTCCGAAAGCGATGAATCGGATGTGGACGAAGCAGGAATGCGCGCGATGCAGAAGAAAGCGCCGCGATTGAACGATATCAATAGGTTCAGGATACACGGCGAAGAGAATTCGCCGGTGACGGGAAAGTACATCGAGGATCAAAACGCCGCTTCCGTTATCGCAGCGACTGGTGGAGACCGAATTAAACAGAGTACCTTGAATAATCTATTGATTCCCAGTGCATCTGCGAACGTAGACAAATTTAAGGTATTGCGTCTCCAGGAATCCAGTGCAGCTACGGTGAGTGAGGTAGACTTCTCTAATGATAACGAAAATGATAATGAAGAAGATGAAAACGACGAACAAAAAGAGGGAGATGATGGTGAAGATGAAAGCGAAGTTCAAGGTCAAGGTCAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAAGGTGAGAGTGAGAGTGAGAGTGAGGGTGAAGATGAAGATGAAGATGAAGATGAAGATGAAAGTGAAGGTGAGGGTACCAGCGAAGCCGAGGCTGAGAGTGGAGGGACTGAAGGTGAAGACAACGCTGAAGGTGACGGGGatgaagaggaagaggaggaaaaTGATGaggatgacgacgacgacggacCGCCTGTGTTAAGTCCGATAATGCCTTTGTTACCTGAAAACGAATCCGAGGAACACAGCAATACGATGGATCGTACAAGGCATAAGCTTAGTCCGATGGTATCGCTGAATATGGACAAATTAATGGAGGAATGTGAAATAACGGAGATCAAAACTGATACAGAGAATACAGTGGTACTGTCGAACGCCTCCAATTTCTTCGCGGCTAATAACAACGATTTACCCGTGACATGGGACGAGGATGAGGAACGCGATTGTAATTCCGATATCGCAGATAGAGATGTGATGGTAATGAAGAACGAGGAGTTTGATAAGGAGTATACGAAGAGGAATATCAACGATTTGGAAGGCGACGACTATGAGGAGGATTCCACGAACGAAAATGTGATGGATGATAGAGGTGGTGGTGGTGGAGATCAAGTGCACGCGATACATAGTCTAGACGGGACAGTGTTAATGATGACTAATGATGCGGAAGGTAATCCGATTTTGATAGAGCATAACGTGTTAGATATCGATAACGAGGATTCTAACGCTGAGGTGGCGCAGTATATTTATCCAGATAATGCTTACGAGATCGAGCAAGAGGACGAGGAAGATTTTGCGACTCGAAACGAAACCGACGTCATGCAGGATGAGATACAAGGTATGTCCTACATTCAGGATATGTCAGAGAACGACAATAGCACGGTAGATGATGTAGAAGGGGACAGTAATGACGCCCAGAAATAG
- Protein Sequence
- MATISTTTTPTSTSTSTLAATTKDTMAMPIERRKSYHDLCRLCASYDNVSMHIFGQEGRNRQLVDKIQTCLPFKIEEDDRLPKVLCYRCMYNLENFYDFRTACVNASAWLERNRPKEGVNDDGANDSAQCSEMHTELLKGKENMPILIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDASEGTDEVLDDSTEDRRSEYEYEMDMETNPSDFLEMTPMVTEENEEEYGANNTSAATGQQEAATVIPPTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVSLSRAETRYQCQTCPMIYKDLADFNAHRQICIEEQRTDLLGQTDAQNNKSLVDMSDMSSIIDSDDENKDFRSAEAKLAKNPQLTILKQALTKGDTLKRIYDDDGSTLSCKARKMVKIEGETNPEIKRWYCEYCPQSFTSVDNLKLHEVRHDAEKPFICILCKKDFVLKSSLIRHITTIHGIDPTPIIDSDKCLKTSVMPQNWNRMDVSVYEQNDIKEPPEFSSSPETNLDNDEKDLKNNHENIEIETVFICEICTRDFNDRASLWLHMRATHKELAAYACGVCLKICSDNTQLQSHLYMYHGKSKLLISEQRRYSCTICGRQHDSRKKLIAHVSIHNIDSGFDPAIFVQLNSNYYNENLNGTEVNEQVMDFDGEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSEQIIPLGDAAGSGNAPNINGNGNRAQYHLFFVCEICGSSHSSKWERWLHINNMHSNESSIKCEWENCGKIFATKSLRNDHLQHHLIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVVQLSAHVKAKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEMTAAVAADVSCDNSNHNDTTNELVKLEHGNNRAVDFKLKCEQCPEHKFTTLDILRNHRRVMHNLFPCDLCVKYYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRYVPTMGGKDNQNCIVSKSLNMEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENAIRDHYEHVHNVPKDQLAVFEYRMDIGAKREDYETPDIIVKEEPDDLEFDEMCDESSSDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKNNGDGKRRMRNRNNYECKNCKKQFSTKTLFWNHINACTRRNSVCRFDVPNNISTSILESHLKNNNQIQREEPVSLMNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQVKSTGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGYFRCEKCQQGFASEEKLGEHATNCNGKSEFENHAVTADIEDNAKNDNDEKGSLIADETSVIEEEVEEADFESEGEGSRDIQNEENNSEEDNSDGDDSDSDSNSSSSENEGQEEEEEEEEEEEEEEGEEEEEEGEEEEENENENESDTRTEPDTRTSSRASGDSESCNSESDESDVDEAGMRAMQKKAPRLNDINRFRIHGEENSPVTGKYIEDQNAASVIAATGGDRIKQSTLNNLLIPSASANVDKFKVLRLQESSAATVSEVDFSNDNENDNEEDENDEQKEGDDGEDESEVQGQGQGEGEGEGEGEGEGESESESEGEDEDEDEDEDESEGEGTSEAEAESGGTEGEDNAEGDGDEEEEEENDEDDDDDGPPVLSPIMPLLPENESEEHSNTMDRTRHKLSPMVSLNMDKLMEECEITEIKTDTENTVVLSNASNFFAANNNDLPVTWDEDEERDCNSDIADRDVMVMKNEEFDKEYTKRNINDLEGDDYEEDSTNENVMDDRGGGGGDQVHAIHSLDGTVLMMTNDAEGNPILIEHNVLDIDNEDSNAEVAQYIYPDNAYEIEQEDEEDFATRNETDVMQDEIQGMSYIQDMSENDNSTVDDVEGDSNDAQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869056;
- 90% Identity
- iTF_00729511;
- 80% Identity
- -