Nful002260.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- -
- Assembly
- GCA_005281655.1
- Location
- NW:1778132-1793120[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 5.8e-06 0.00047 20.2 1.0 1 23 250 272 250 272 0.98 2 32 0.0084 0.68 10.2 3.7 1 23 295 318 295 318 0.96 3 32 3.1e-05 0.0025 17.9 1.0 2 23 325 347 324 347 0.96 4 32 0.0021 0.17 12.2 0.1 1 21 367 387 367 388 0.95 5 32 0.0008 0.064 13.4 0.2 2 23 487 508 486 508 0.94 6 32 0.0019 0.15 12.3 0.2 1 23 514 537 514 537 0.93 7 32 8.2e-05 0.0065 16.6 0.1 1 23 607 630 607 630 0.96 8 32 0.01 0.81 10.0 1.2 1 23 636 659 636 659 0.95 9 32 0.058 4.6 7.6 0.8 1 23 672 694 672 694 0.97 10 32 3.3e-05 0.0027 17.8 0.9 3 23 739 760 738 760 0.96 11 32 1.4 1.1e+02 3.2 0.4 1 23 793 816 793 816 0.92 12 32 5 4e+02 1.5 2.2 2 19 823 842 822 846 0.81 13 32 0.84 67 3.9 0.0 2 23 855 877 855 877 0.90 14 32 0.024 1.9 8.8 0.0 2 23 884 906 883 906 0.93 15 32 1.2e-05 0.00097 19.2 1.2 1 23 914 936 914 936 0.98 16 32 0.011 0.9 9.8 1.6 2 23 989 1012 988 1012 0.95 17 32 0.0039 0.31 11.3 1.0 1 23 1015 1038 1015 1038 0.97 18 32 0.00064 0.051 13.8 0.1 2 23 1045 1067 1044 1067 0.95 19 32 0.00085 0.068 13.4 3.9 1 21 1095 1115 1095 1116 0.95 20 32 0.0025 0.2 11.9 1.8 2 23 1130 1151 1129 1152 0.93 21 32 0.33 27 5.2 1.1 1 23 1155 1178 1155 1178 0.94 22 32 0.025 2 8.8 2.1 2 23 1185 1208 1184 1208 0.90 23 32 2.8 2.3e+02 2.3 0.2 2 23 1216 1238 1216 1238 0.94 24 32 3 2.4e+02 2.2 0.0 2 23 1245 1267 1244 1267 0.88 25 32 0.21 17 5.8 2.7 2 23 1276 1298 1276 1298 0.96 26 32 0.64 52 4.3 0.5 2 23 1304 1326 1303 1326 0.91 27 32 0.016 1.2 9.4 0.1 1 23 1388 1411 1388 1411 0.95 28 32 6.2e-05 0.005 17.0 0.7 1 21 1436 1456 1436 1457 0.96 29 32 0.3 24 5.4 1.9 2 23 1557 1579 1556 1579 0.94 30 32 1.1 89 3.6 0.7 2 23 1586 1608 1585 1608 0.94 31 32 0.65 52 4.3 2.5 1 23 1619 1641 1619 1641 0.97 32 32 0.013 1.1 9.6 0.6 2 19 1646 1663 1645 1666 0.92
Sequence Information
- Coding Sequence
- atggcgacgacgacgacgacgacggcggcgacgacgacgacgacgtcttCGTCGGTGCCGATGGAACGGAAGAAGTCGTACCACGATCTCTGTCGGCTGTGCGCGTCCCACGACAACATCAGCATGCACATTTTCGGCGAGGAAGGCGTGAACCGGCAGCTCGTCGACAAAATCCAGACCTGCCTGCCGTTCAAGATAGAGGAGGACGATCGTCTGCCGAAAGTTCTGTGTTATCGATGCATGTACAATTTGGAAAATTTTTACGACTTCAGAACCGCGTGCGTGAACGCGGCCGCCTGGCTGGAAAGAAACAGGCCCAAGGAAGGCGCAAACGATGACGGTGCAAATAATAGCACGCAGTGCAGCGAGATGCACGCGGAGCTTCTCAAGGGAAAGGAAAATATGCCAATACTTATCCCGGAGGCGCCTGTGGTTAATCCGAATGCCGCGTTAGGTACACCGCCGAGATTGAATTCTGACGGTGAGGCCGAGGTCGAAGAGATTCTCGATGCGAGCGAAGGTACGGATGAAGTGCTCGATGATTCGACGGAGGATCGACGTTCGGAGATGGATTACGAAGACGGATACGAGATGGACATGGAGACGAATCCCAGTGATTTCTTAGAAATGACGCCGATGGTGACCGAGGAAAACGAGGAAGAGTGCAGCGCGAATAATACGAGCGCCGTTGCCGGTCAACAAGATGCCACGGTCGTCTTCCCACCTACGTCGCAGCAGCACGAGGTCTATGTGTGCTCTCTGTGCAACAAGGCGTTTAGCTCCAAAGGTCATTTGTCACTGCACGCGAGGATTCATGTGGGCGAGGGTGATGTGATCGGCGAAAGGGTCATCACCGACGATCATACCTCGTATCAACGACCGTACCAATGCGATCTCTGCCACAAATCGTATTCTACCGCGAAACATCGCTGGGGACACGTTTCTACGACACATAGGGGACATCCTGCGGTAACGTGTAAGTACTGCTCGCGCATATACTCGACACGATACAACCTGGAGGAGCATATAAAATCCCGACACGCCGGTCTAGCGCCACCTCCGGAAGTATCGGTGTCCTTTTCCCGCGCGGAGACACGTTATCAATGTCAAACGTGTCCGACGGTTTATAAAGATCTGGCAGATTTCAACGCGCATCGTCAGATATGCGAGGAGCAACGCAGCGCCGATCTATTAGGGCAAGCCGACGCGCAGAACAATAAGAGTGTAATCGATGTGTCCGATATGTCGAGTATCGTAGACTCGGATGACGAGAACAAAGACTTCAGGAGTGCCGAGGCTAAACTGGCCAAGAATCCAAACTTGACTATATTGAAACACGCGTTGACTAAAGGAGACAGTTTAAAACGGAATTACGACGATGATGGTTCAACGTCGAGTTGCAAGACGAGAAAGATGGTCAAGATAGAAGGTGAGACGAATCCTGAGATAAAAAGGTGGTATTGCGAATATTGTCCACAAAGTTTCACATCGGTGGACAGTTTAAAGTTGCACGAAGTTAGGCACGACGCCGAGAAGCCGTTTGTCTGCATACTATGCAAGAAGGATTTCGCTTTGAAATCTTCATTGATAAGGCATATCCTGACGATACACGGCGTCGATCCTACTCCTATCATTGACAACGACAAGTGTCTAAAGACATCTGTGATGCCTCAGAATTGGAATCGAATGGATGTCAGCGTTTACGAGCAGAACGAAATAAAGGAACCACCGGAGTTTTCGTCGTCACCTGAGGTAAATTTGGACAATGATGACAAAGACTCGAAAAACAATCACGAGAATATTGAAATCGAAACAGTATTTATATGTGAGATTTGTACGAGAGACTTTAATGATCGAGCGTCGTTATGGTTACACATGCGTGCAACGCATAAGGAACTTGCTGCATTCGCCTGTGGAGTGTGTTTAAAAATATGTTCCGATAATACACAACTCCAGAGTCATCTTTACATGTACCACGGAAAATCCAAGCTTTTGATATCGGAACAAAGAAGGTACAGCTGCACGATATGCGGCAGGCAGCACGATTCAAGAAAGAAGCTAATCGCTCATGTCTCGATACACAATATCGACTCTGGGCTTGATCCTGCAATTTTTGTACAATtaaacagtaattattataacgAGAATTTAAATGGTACCGAAGGAAATGAGCAAGTAATAGATTTTGATGCAGAAGATAGCGAGAAAGTCGATTGTTACAtttgttataaatcttttccaAATGAGGATCACCTTATACGACATCAGAGAAATGCGCATAAGTCCGAACAGATAATTTCGTCGGGAGACGCCGCGGGAAGTGGAAACGCTGCGAATGTCAACGGCACCGGTAACAGGGCGCAGTATCATTTATTTTTCGTTTGCGAAATCTGCGGTAGCTCTCATTCGAGCAAATGGGAACGCTGGTTGCATATCAACAACATGCATAGTAACGAATCTTCCATCAAGTGTGAATATGAAAACTGCGGGAAGATATTCGCAACGAAATTGTTGCGTAATGACCATTGTCAGCATCATTTGATCCAAGGTCCGTCGCCGAACACCTGCGAAATATGCGGGAAATTGTGGCCTACCCGTGTCGATTATTGGAAACACGTGATGGGCGTCCACGCGGACATGGTGCCCCTGATCTGTGGCGTTTGTCTGAAAGTATTTTCCGACGTGATGCAGTTAAGTGCCCACGTTAAGGCGAAACATTGGCCACTGACCAGTGGTGATTTCAGCTGTGATATTTGCGGTAGGCCGTACTCCAATAAATCAAAAATGTCCCGGCATAGAAAGATCCACGGTTTGGAGGTGGCAGCAGCAGCGGCGGCAGCtgcagcggcggcggcggcggcggtagTCGCGGACGTCGCGTGTGATAACAGCAACCTGAACGAGCCGACCAACGAATCGATCAAGCTCGAGCATGGCAACAATAGAGCTGTAGACGTAAAATTGAAATGCGAACAGTGCCCCGAGCACAAGTTCACGACTCTGGACAGTTTACGTAATCATCGTCGGGTGGTGCACAATCTCTTCCCATGCGATCTATGCGTTAAGTATTATGGTAGGACGTCGCACTTGTGGAAACATGTGAACAGAGTGCACAAGGGTCACCCGGACGTGACTTGTCCGTACTGTGCGAAAACGAGCGCGTCGAGGGATCATCTGGCGGCGCACATTGCCAAGATTCACAGGTACGTACCCACCATGGGTACCAAGGACAATCAAAACTGTATCGTTTCCAAGTCCTTGAGTATGGAGGACGGTGTCTTGCATTACTGCGAAAAGTGTAACAAGGGATTCCATAAGCGTTACCTGCTCCGACGTCATATGAAGGGTTGCCAAAACTATCGTAAGGATCCTGGAGCGTTATTGACCCGCTGCCGAGCCTGCGAGAGGATATTCAAGGATCGCGCGAGTCTGCAGAAGCACATCGAGAATCACCACAGCACCTACACCTGCCATTTGTGCAACGAGACCATCACCTCCAAGCTGGGTATCATGACGCACaatcgcgtcaatcacatggaTCACCCGGATCTGACGTGCGACCATCCAAGCTGTAAGAAACTTTTCCGCACCAAGGAGGATCTCGAGTCTCATCGCAAGGATCACAAATATCACAGCAACCCGAACGTTTGCGATTTCTGCGGTGACACCGTGGAGAACAAACTCAAGTTGAAGATGCACGTATTATCATTACATCGGAACGAGATCGGCGTGTCCTGTGGTGTCTGTCTCATTCCTATGAAGGATCCGAAAGACTTGAAGAAACACGTCGAGGCAGAGCACAGCAGCGTTCTTTCCAATCCGAATACGTGTCAGGTGTGTGGCAAGCAGTACGCGTCCAAGTGGAAGGCTTTCGATCACACGAAGAAGTGTCATGGAAAAGTTTTTCTCACGTGCAAGCAGTGCTTAGCAGTTTTCACGGACGAGAACGATATACGCGATCACTACGAACATGTGCACAACGTTTCAAAGGACCAATTAGCCGTATATGAATATAGAATGGACATGAGCGCGAAGAGGGAAGACTACGAGACGCCCGATATCATCGTGAAGGAGGAACCGGACGATCTCGAGTACGACGAGGAGATGTGCGACGAGAGCTCGAACGATTCCCGCAAACGCAGACGATCCCCGAATGACACGTACGATTGCGAAATGTGTCCCGAGATCTTCCTCAATTCCGACACACTCGCCAAGCATTATCAGAACGTTCACAACACCGATCCCGTTCGCATGTTCAAGAAGTTCAAGAAAAATGACAAGCGTAAAATGAGAAACAGAAGCAACTACGAGTGCAAGAATTGCAACAAGAATTTCTCCACCAAGACCCTGTTCTGGAATCACATCAACGCGTGCACGCGACGCAACTCGGTATGTAGATTCGACGTCCCGAACAATACAATTCCGACGTCGATTCTGGAGTCGCATCTGAAGAACAACAACCAGATCCAGCGAGAAGAACCGCTGACGAACGAATCCAACTTGAACATTCCCGACTTCAATCTGTTCGAGGACATCAATCTGCAATTGTCGGCCCAGAAACCGGTGCCGAATCTCATGCCGTTATCGCACGTCAAGTCCACCGGGAATGGCAAGTGCTCGCGGAAAGATTCGCGCAAGGTGTACGACGAGACGACGAATACCGAGTGCACGTGCGAGGTCTGCGGTAAACAGTGGCCCGCCAAGAAGCACCTGTGGCAGCATCTGATTCGCTTTCATCGCGCCGAAGCCGCGGTCACCTGCGGGGTCTGTCTGAAACTGTGCAAGTCTTATCAAGACCTGAGCGATCACCTGAAGGCCGAACACGCCCCTGTGTTGTCGCCGGAGGGCAACAATTTCACGTGCAAGACATGCGGCAGGTATCACAACGCGAGAAGCAAACTACTGCTGCACATGAGCATTCATATCAATTACTGCCGGTGCGACAAGTGTCAGCAGAGTTTCTCGAGCGAGGAGAAGCTCGCCGAGCACGCGGCGAGCTGCACCGGAATCTGCAAGTCGGAATTTGAGAATCACGCGGCGACGGCGGATGCCGAAGACAACGCGAAGAACGACAACGATGAGAAGGGTAGCTTGATTGCCGACGAAACATCGGCCATCGAAGAGGAGGTCGAAGCGGATTTCGAGTCGGAGGGCGAAGAGGGTAGCAGAAGCATCCAGAACGAGGAGAACAACAGCGAGGAGGACAATTCGGATAGCGACGACTCGGATAGCGACAGTAGTTCGAGCGAGaacgaggaggaagaagaggaggagaagcaagaggaggaggaagaggaggagaATGAAAACGAGTCCGACTCGGACACGAGAAGCTCGAGCGCCGCGAGCGGCGACAGTAGATGCAATTCCGAAAGCGAAGACTCGGACATGGAGGACGTGCACGTGATGCGGAAGGAAACGATGCAGTACGACGAAGATATCGATAGGTTCAGGATACAAGAGAACTCGTCGGCGATGGAGAAGTACGAGGATCAGAGGACCGTTTCCGTCATCGCGGCGGCGGAGCAGAATAAACAGAGTAATTTGAATAACTTACTGATTTCCGACGCACCTGCGAACGCAGACAAATTTAAGGCGATGCGTCTTCAGGAAGCCACTGCAGCTAGCGACTTCTCTAATGATAACGAGAATGATAATGAGGAAGATGACGAAGaggaaaataatgaaaatgacGAAGGAGATGAGGGAGATGAGGGTGAAGGTGAAGGTGAAGGTGAAGACGAGGGTGAGGGTGAAGATGATAATGAAGACGAAGAGGAAAGTGAAGGTGAAGGTGAGGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGACGTTACGAGCGAGGCCGAGGCTGAAAGTGAAGATGAAAATGACGGCGAAAATGACGCTAAAGGTGAGgcggaagaagaagaagaagaagaagaggaggaagaggaagaagaagaggaagaagaacaGGAGGAAAACGAtgaagacgacgacgacggcccGCCTGTGCTGAGTCCGATAATGCCTTTGTTGCCGGAAAACGAGTCTGAAGAGCACAGCAATACGATGGATCGTACAAGGCATAAGCTTAGTCCGATGATATCGCTGAATATGGACAAGTTGATGGAAGGATGCGAGATAACGGAGATTAAAACTGACGGGGAGAACACAGCCGCGCCGTCGAACGAGTCCAATTTCTTCGCGGCTAACAACAACGATCTGCCGGTGACCTGGGACGAGGATGATGAACGCGATTGCGATTCCGACGCCGGGGACAGAGGAGGCGTGATGGTGGTGAAGAACGAGGAGTTCGCCAAGAGGAGCGTCAACGAGCTGGAGGGCGACGACTACCAGGAAGATTCCGCGGATGAGAACGTCATGGACGATGATAGGGACGGTGGTAGTGGGGATCAGGTGCACGAGATACATAGCCTAGACGGGACAGTGTTAATGATGACTAATGACGCGGAAGGTAATCCGATTTTGATACAGCATAACATGTTAGGTATCGATAACGAGGACTCTAACGCCGAAGTGGCACAGTATATTTACCCAGAGAACACTTACGAGATCGAGGAAGAGGGAGACGAAACCGACGTCACGCAGACGGCTGAGATACAAGGTATGTCCTACGTTCAGGTTCAGGATATGTCGGAGAACGAGGACGACGACAGCACGGGGGATGAGAACGTAGAGGAGAATAGTACTGACGCCCAGAAATAA
- Protein Sequence
- MATTTTTTAATTTTTSSSVPMERKKSYHDLCRLCASHDNISMHIFGEEGVNRQLVDKIQTCLPFKIEEDDRLPKVLCYRCMYNLENFYDFRTACVNAAAWLERNRPKEGANDDGANNSTQCSEMHAELLKGKENMPILIPEAPVVNPNAALGTPPRLNSDGEAEVEEILDASEGTDEVLDDSTEDRRSEMDYEDGYEMDMETNPSDFLEMTPMVTEENEEECSANNTSAVAGQQDATVVFPPTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCKYCSRIYSTRYNLEEHIKSRHAGLAPPPEVSVSFSRAETRYQCQTCPTVYKDLADFNAHRQICEEQRSADLLGQADAQNNKSVIDVSDMSSIVDSDDENKDFRSAEAKLAKNPNLTILKHALTKGDSLKRNYDDDGSTSSCKTRKMVKIEGETNPEIKRWYCEYCPQSFTSVDSLKLHEVRHDAEKPFVCILCKKDFALKSSLIRHILTIHGVDPTPIIDNDKCLKTSVMPQNWNRMDVSVYEQNEIKEPPEFSSSPEVNLDNDDKDSKNNHENIEIETVFICEICTRDFNDRASLWLHMRATHKELAAFACGVCLKICSDNTQLQSHLYMYHGKSKLLISEQRRYSCTICGRQHDSRKKLIAHVSIHNIDSGLDPAIFVQLNSNYYNENLNGTEGNEQVIDFDAEDSEKVDCYICYKSFPNEDHLIRHQRNAHKSEQIISSGDAAGSGNAANVNGTGNRAQYHLFFVCEICGSSHSSKWERWLHINNMHSNESSIKCEYENCGKIFATKLLRNDHCQHHLIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADMVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFSCDICGRPYSNKSKMSRHRKIHGLEVAAAAAAAAAAAAAAVVADVACDNSNLNEPTNESIKLEHGNNRAVDVKLKCEQCPEHKFTTLDSLRNHRRVVHNLFPCDLCVKYYGRTSHLWKHVNRVHKGHPDVTCPYCAKTSASRDHLAAHIAKIHRYVPTMGTKDNQNCIVSKSLSMEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHVHNVSKDQLAVYEYRMDMSAKREDYETPDIIVKEEPDDLEYDEEMCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKNDKRKMRNRSNYECKNCNKNFSTKTLFWNHINACTRRNSVCRFDVPNNTIPTSILESHLKNNNQIQREEPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSHVKSTGNGKCSRKDSRKVYDETTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLSDHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHINYCRCDKCQQSFSSEEKLAEHAASCTGICKSEFENHAATADAEDNAKNDNDEKGSLIADETSAIEEEVEADFESEGEEGSRSIQNEENNSEEDNSDSDDSDSDSSSSENEEEEEEEKQEEEEEEENENESDSDTRSSSAASGDSRCNSESEDSDMEDVHVMRKETMQYDEDIDRFRIQENSSAMEKYEDQRTVSVIAAAEQNKQSNLNNLLISDAPANADKFKAMRLQEATAASDFSNDNENDNEEDDEEENNENDEGDEGDEGEGEGEGEDEGEGEDDNEDEEESEGEGEGEGEGEGEGEGEGEGDVTSEAEAESEDENDGENDAKGEAEEEEEEEEEEEEEEEEEEQEENDEDDDDGPPVLSPIMPLLPENESEEHSNTMDRTRHKLSPMISLNMDKLMEGCEITEIKTDGENTAAPSNESNFFAANNNDLPVTWDEDDERDCDSDAGDRGGVMVVKNEEFAKRSVNELEGDDYQEDSADENVMDDDRDGGSGDQVHEIHSLDGTVLMMTNDAEGNPILIQHNMLGIDNEDSNAEVAQYIYPENTYEIEEEGDETDVTQTAEIQGMSYVQVQDMSENEDDDSTGDENVEENSTDAQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869056;
- 90% Identity
- iTF_01254981;
- 80% Identity
- -