Basic Information

Gene Symbol
-
Assembly
GCA_003651465.1
Location
NW:13589-27261[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 5.4e-06 0.00036 20.2 1.0 1 23 257 279 257 279 0.98
2 32 0.0078 0.53 10.2 3.7 1 23 302 325 302 325 0.96
3 32 0.00053 0.036 13.9 0.5 2 23 332 354 331 354 0.96
4 32 0.0077 0.52 10.2 0.1 1 21 374 394 374 395 0.95
5 32 0.00025 0.017 14.9 0.2 2 23 494 515 493 515 0.94
6 32 0.00025 0.017 14.9 0.3 1 23 521 544 521 544 0.96
7 32 2.2 1.5e+02 2.5 0.1 1 13 614 626 614 627 0.89
8 32 0.0069 0.47 10.4 1.1 1 23 643 666 643 666 0.95
9 32 0.054 3.6 7.6 0.8 1 23 679 701 679 701 0.97
10 32 3.1e-05 0.0021 17.8 0.9 3 23 746 767 745 767 0.96
11 32 1.3 89 3.2 0.4 1 23 800 823 800 823 0.92
12 32 0.0042 0.28 11.1 0.8 2 23 830 853 829 853 0.94
13 32 0.78 52 3.9 0.0 2 23 862 884 862 884 0.90
14 32 0.016 1.1 9.2 0.0 2 23 891 913 890 913 0.93
15 32 1.1e-05 0.00076 19.2 1.2 1 23 921 943 921 943 0.98
16 32 0.94 63 3.7 1.2 2 23 990 1013 989 1013 0.95
17 32 0.0036 0.24 11.3 1.0 1 23 1016 1039 1016 1039 0.97
18 32 0.0006 0.04 13.7 0.1 2 23 1046 1068 1045 1068 0.95
19 32 0.00079 0.053 13.4 3.9 1 21 1096 1116 1096 1117 0.95
20 32 0.0023 0.16 11.9 1.8 2 23 1131 1152 1130 1153 0.93
21 32 0.31 21 5.2 1.1 1 23 1156 1179 1156 1179 0.94
22 32 0.023 1.5 8.8 2.1 2 23 1186 1209 1185 1209 0.90
23 32 2.6 1.8e+02 2.3 0.2 2 23 1217 1239 1217 1239 0.94
24 32 2.8 1.9e+02 2.2 0.0 2 23 1246 1268 1245 1268 0.88
25 32 0.2 13 5.8 2.7 2 23 1277 1299 1277 1299 0.96
26 32 0.99 67 3.6 0.4 2 23 1305 1327 1304 1327 0.91
27 32 0.014 0.97 9.4 0.1 1 23 1389 1412 1389 1412 0.95
28 32 0.00013 0.0091 15.8 0.9 1 21 1440 1460 1440 1461 0.96
29 32 0.28 19 5.3 1.9 2 23 1562 1584 1561 1584 0.94
30 32 0.79 53 3.9 0.4 2 23 1591 1613 1590 1613 0.94
31 32 0.6 40 4.3 2.5 1 23 1624 1646 1624 1646 0.97
32 32 0.15 9.9 6.2 0.1 1 19 1650 1668 1650 1671 0.91

Sequence Information

Coding Sequence
ATGGCGACGATatcgacaacgacgacgacgacgttgaCGTCGACGTCAACGTTGGCGGCTACAACGAAGGACACGATGGCGATGCCGATGGAGCGAAGGAAATCTTATCATGATCTCTGTCGCCTGTGCGCCTCTTACGACAACGTTAGCATGCACATATTCGGCCAGGAAGGCAGAAATCGGCAGCTCGTTGACAAAATTCAGACATGCCTGCCGTTCAAGATAGAGGAAGATGATCGTTTGCCGAAAGTCCTGTGTTATCGATGCATgtataatttggaaaatttttacgaCTTCAGAACCGCATGCGTGAACGCATCTGCTTGGTTGGAAAGAAATAGGCCCAAGGAAGGCGTGAACGATGACGGTGCAAATGATAGCGCGCAATGCAACGAGATGCACACGGAGCTTCTCAAGGGAAAGGAAAATATGCCAATACTTATCCCGGAAGCGCCCGTGGTCAATCCGAACGCCGCATTAGGTACACCACCGAGATTGAATTCAGACGGAGAGGCCGATCCCGAGATCGAAGAGATTCTCGATGCGAGTGAAGGTACGGACGAAGTGCTCGATGATTCGACGGAGGATCGACGGTCGGAATACGAATACGAGATGGACATGGAGACGAATCCTAGCGACTTTTTAGAAATGACGCCGATGGTAACCGAAGAAAACGAGGAGGATTGCGGCGCAAACAATACGAGTGCCGCGACCGGTCAACAAGAAGCCACGACGGTCTTTCCCCCTACTTCGCAGCAGCACGAGGTCTATGTATGTTCTCTATGCAACAAGGCATTTAGCTCCAAGGGTCATCTATCGTTGCACGCGAGAATTCACGTCGGTGAGGGTGATGtgatcggtgaaagggttatTACTGACGACCATACCTCGTATCAGCGACCGTATCAATGCGATCTCTGTCATAAGTCGTATTCTACCGCGAAGCATCGCTGGGGACACGTTTCTACGACACATCGGGGACATCCTGCTGTAACATGTGCGTACTGCTCGCGCATATATTCGACGCGGTACAACCTCGACGAGCATATAAAATCGCGACACGCCGGTCTACCGCCACCCCCGGAATTATCAGTTTCCCTTTCCCGCGCGGAGACTCGTTATCAATGCCAAACGTGTCCGAtgatttataaagatttggCAGATTTCAATGCGCATCGTCAGATATgcattgaggaacaacgcacTGATCTATTGGGGCAAACCGACGCGCAGAACAATAAGAGTTTAGTCGATATGTCCGACATGTCGAGTATTATAGACTCTGACGACGAGAACAAAGACTTTAGGAGTGCCGAGGCTAAACTGGCCAAGAATCCGCAATTGACTATTTTGAAACAAGCGTTGACTAAAGGAGACAGTTTAAAAAGGATTTACGATGATGATGGTTCAACGTTGAGTTGCAAGGCGAGAAAAATGGTCAAGATAgAAGGTGAGACGAATCCTGAGATAAAAAGGTGGTATTGCGAATATTGTCCGCAAAGTTTTACATCGGTGGACAATCTAAAGTTGCACGAAGTCAGGCATGATGCCGAGAAGCCGTTTATCTGCGTACTATGCAAGAAGGATTTTGTTTTGAAATCTTCATTGATAAGGCACATTACGACAATACACGGCGTTGATCCTACTCCTATCATTGACAGCGACAAGTGTCTAAAGACATCTGTGATGCCTCAGAATTGGAATCGAATGGATGTTAGCGTTTACGAGCAGAACGATATAAAGGAACCACCAGAATTTTCGTCGTCACCCgagACAAATTTGGACAATGATGAGAAAGATTTGAAAAACAACCACGAGAATATAGAAATCGAAACAGTATTTATATGTGAGATTTGTACGAGGGACTTTAATGATAGAGCGTAGTTATGGTTACACATGCGTGCAACGCATAAGGAACTTGCTGCATATGCCTGTGGAGTATGCTTAAAGATTTGTTCCGATAATACACAACTCCAGAGTCATCTCTACATGTATCACGGAAAATCCAAGCTTTTAATATCGGAACAAAGAAGGTACAGTTGCACAATATGTGGCAGGCAACACGATTCAAGAAAGAAGCTAATAGCTCATGTCTCGATACACAATATCGATTCTGGGTTTGATCCTGCAATTTTTGTACAGTTAAACAGTAATTATTACAACGAGAACTTAAACGGTACCGAAGGAAATGAACAAGTAATGGATTTTGATGGAGAAGACGGCGAGAAAGTCGATTGTTACATTTGTTACAAATCTTTTCCAAACGAGGATCATCTTATACGACATCAGAGAAATGCGCATAAGTCCGAACAAATAATTCCGTTAGGAGACGCCGCCGGAAGTGGAAACGCTCCGAATATCAACGGCAACGGTAATAGGGCACAGTatcatttgttttttgtttgtgaaatttgCGGTAGTTCTCATTCGAGTAAATGGGAACGCTGGTTGCATATCAACAATATGCATAGTAACGAATCTTCCATCAAGTGCGAATGGGAAAACtgtggaaaaatatttgcgacGAAATCACTGCGCAATGACCATCTCCAGCATCATTTGATCCAAGGCCCATCGCCGAATACGTGCGAGATATGCGGTAAATTATGGCCTACCCGTGTCGATTACTGGAAACACGTGATGGGTGTTCACGCGGATACGGTACCCCTGATCTGCGGCGTTTGTCTGAAAGTATTTTCCGACGTGGTGCAGTTAAGTGCCCACGTAAAGGCGAAACATTGGCCACTGACCAATGGTGATTTCAGCTGTGATATTTGCGGTAGGCCATATTCCAATAAATCCAAGATGTCCCGGCATAGAAAGATCCACGGTTTGGAAATGGcagcggcgacggcggcggcggcggtggctgCGGATGTCGCATGTGATAATAGCAACCTCAATGACACAACCAACGAATCGGTGAAATTCGAGCACGGCAACAACAGGGCCGtagatttcaaattaaaatgcgAACAATGCCCCGAGCACAAGTTCACGACTCTGGACATTTTACGCAATCATCGTCGGGTAGTGCACAATCTCTTTCCGTGCGACCTATGCGTTAAGTACTATGGTAGGACATCGCACTTATGGAAACACGTGAACAGAGTACACAAGGGTCACGCGGATGTGACTTGTCCATACTGCGCGAAAACGAGCGCGTCGAGGGATCATCTCGCGGCGCACATCGCGAAGATTCACAGGTACGTGCCCACGATGGGTGGTAAGGATAGTCAGAACTGCGTTGTTTCCAAGTCCTTGAATATGGAAGATGGTGTCCTGCATTACTGCGAGAAGTGTAACAAGGGATTCCACAAGCGCTATCTACTCCGACGTCATATGAAGGGCTGTCAAAACTACCGTAAGGATCCTGGAGCACTATTGACCCGCTGCCGAGCCTGCGAGAGGATATTCAAGGATCGTGCGAGTCTACAAAAGCACATCGAGAATCACCACAGCACATATACCTGCCATTTGTGTAACGAGACCATTACGTCCAAACTGGGCATCATGACGCACAATCGCGTCAATCATATGGATCACCCGGATCTGACATGCGATCATCCGAGCTGTAAGAAGCTTTTCCGCACCAAGGAGGATCTCGAGTCTCATCGAAAGGATCACAAATATCACAGCAATCCGAATGTCTGCGATTTCTGCGGTGACACCGTGGAGAATAAACTAAAGTTAAAGATGCACGTGCTATCGTTACACCGGAACGAGATCGGTGTGTCCTGCGGCGTTTGTCTCATTCCTATGAAGGATCCGAAAGATTTGAAGAAACACGTCGAGGCGGAACACAGTAGCGTTCTTTCCAATCCGAATACATGTCAAGTATGTGGCAAGCAGTATGCATCCAAGTGGAAGGCTTTTGATCACACGAAAAAATGTCATGGGAAAGTTTTTCTCACGTGCAAACAATGTTTAGCAGTTTTCACGGATGAGAACGCTATACGCGATCACTACGAACATGTACATAACGTTCCAAAGGATCAATTAGCCGTTTTCGAATATAGAATGGACATCGGTGCGAAGAGGGAAGATTACGAGACGCCTGATATTATCGTGAAAGAAGAACCGGATGATCTTGAATTTGACGAGGAGATGTGCGATGAAAGTTCGAGCGATTCCCGCAAACGCAGACGATCGCCGAACGATACGTACGATTGTGAAATGTGTCCCGAGATCTTTCTCAATTCGGATACACTCGCCAAGCATTATCAGAACGTTCACAACACCGATCCCGTCCGTatgtttaaaaagtttaagaaGAACAACGGCGACGGTAAGCGTAGAATGAGAAACAGAAACAATTACGAATGCAAGAATTGCAAGAAGCAGTTCTCCACTAAGACCTTATTCTGGAATCACATCAATGCGTGCACGCGACGAAACTCGGTATGCAGATTCGACGTCCCGAATAATATCTCGACATCGATTCTGGAGTCGCACTTGAAGAACAATAATCAGATTCAGCGAGAAGAACCGGTATCGCTAACGAACGAATCCAATTTGAACATTCCCGATTTTAATCTGTTCGAGGACATCAATTTACAATTGTCATCCCAGAAACCGGTGCCGAATCTCATGCCGTTGTCGCAGGTAAAATCGGCAGGTAATGGCAAATGCTCGCGCAAAGACTCGCGCAAAGTGTACGACGAATCGACCAATACTGAGTGCACGTGCGAGGTCTGCGGCAAACAGTGGCCCGCTAAGAAGCACTTGTGGCAACACTTGATTCGCTTCCATCGTGCCGAAGCCGCCGTTACCTGTGGTGTATGCTTGAAACTATGCAAATCCTATCAAGACCTAGCCGATCACCTGAAGGCGGAGCACGCCCCTGTTTTGTCGCCGGAGGGCAACAATTTCACGTGCAAGACATGCGGCAGATATCACAATGCGAGAAGTAAACTGCTGCTACATATGAGCATCCATATCGGATACTTTCGGTGCGAGAAATGTCAGCAGGGTTTCGCGAGTGAAGAGAAACTCGGCGAGCACGCGACGAGCTGCAACGGCAAGTCGGAATTTGAGAATCACGCAGTAACGGCGGATATCGAAGATAACGCGAAAAACGACAATGATGAAAAGGGCAGTTTAATCGCCGACGAAACGTCAGTCATCGAAGAGGAAGTTGAAGAAGCGGATTTCGAATCGGAAGGCGAGGGTAGTAGAGGCATCCAAAATGAAGAAAACAATAGCGAAGAAGACAATTCGGATAGCGATGACTCGGATAGCGGTAGCAATAGCAGTTCGAGTGAGAACGAAGgcgaagaggaagaggaggaggaggaggaggaggaagaggaagaggaagaggaagaggcaGAGGAAGAGGAGAACGAAAACGAAAACGAAAATGAGTCTGATACAAGGACTGAGCCGGATACGAGAACCTCGAGCAGGGCGAGCGGTGACAGTGAATCGTGTAATTCCGAAAGCGATGAATCGGATGTGGACGAAGCAGAAATGCGCGCGATGCAGAAGAAAGCGCCGCGATTGAGCGATATCAATAGGTTCAGGATACACGGCGAAGAGAACTCGCCGGCGATGGAAAAGTACATCGAGGATCAAAGCACCGCTTCCGTTATCGCAGCGACTGGTGGAGACCGAATTAAACAGAGTACCTTGAATAATCTATTGATTCCCGGTGCATCTGCGAACGTAGACAAATTTAAGACATTGCGTCTCCAGGAATCCACTGCAGCTACGGTGAGTGATGTAGACTTCTCTAATGATAACGAAAATGATAATGAAGAAGATGACAACgacgaaaataatgaaaacgacgaacaaaaagagagaggtgATGGTGAAGATGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGTGAAGGTGAAGATGAAGGTAAAGGTGAAGGTGAGGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAAGTGAAGGTGAGGGTACCAGCGAAGCCGAGGCTGAGAGTGGAGAGGCTGAGGGCGAAGACAACGCTGAAGGTGAGggggaagaagaagaggaggaggaggaaaatGATGaggatgacgacgacgacggacCGCCTGTGTTAAGTCCGATAATGCCTTTGCTACCTGAAAACGAATCCGAGGAGCACAGCAATACGATGGATCGTACAAGGCATAAGCTTAGTCCGATGGTATCGCTGAATATGGACAAATTAATGGAAGAATGTGAGATAACGGAGATCAAAACTGATACGGAGAACACGGTGGCACTGTCGAACGCCTCCAATTTCTTCGCGGCTAATAACAACGATTTATCCGTGACATGGGACGAGGATGAGGAACGCGATTGTAATTCCGATGTCGGAGATAGAGATGTGATGGTAATGAAGAACGAGGAGTTTGATAAGGAGTATACTAAGAGGAATATCAACGATTTGGAGGGCGACGATTATGAGGAGGATTCTGCGGACGAAAATGTGATGGATGATAGGGACGGTGGTGGTGGAGATCAAGTGCACGAGATACATAGTCTAGACGGGACAGTGTTAATGATGACTAATGATGCGGAAGGTAATCCGATTTTGATAGAGCATAACGTGTTAGATATCGATAACGAGGACTCTAACGCTGAGGTGGCGCAGTATATTTACCCAGATAATGCTTACGAGATCGAGGAAGAGGACGAGGAAGATTTTGCGACGCGAAACGAAACCGACGCCATGCAGGGTGAGATACAAGGTATGTCCTACATTCAGGATATGTCAGAGAACGACAATAGCACGGGGGATGATGTAGAAGGGGACAGTAATGACGCCCAGAAATAG
Protein Sequence
MATISTTTTTTLTSTSTLAATTKDTMAMPMERRKSYHDLCRLCASYDNVSMHIFGQEGRNRQLVDKIQTCLPFKIEEDDRLPKVLCYRCMYNLENFYDFRTACVNASAWLERNRPKEGVNDDGANDSAQCNEMHTELLKGKENMPILIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDASEGTDEVLDDSTEDRRSEYEYEMDMETNPSDFLEMTPMVTEENEEDCGANNTSAATGQQEATTVFPPTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVSLSRAETRYQCQTCPMIYKDLADFNAHRQICIEEQRTDLLGQTDAQNNKSLVDMSDMSSIIDSDDENKDFRSAEAKLAKNPQLTILKQALTKGDSLKRIYDDDGSTLSCKARKMVKIEGETNPEIKRWYCEYCPQSFTSVDNLKLHEVRHDAEKPFICVLCKKDFVLKSSLIRHITTIHGVDPTPIIDSDKCLKTSVMPQNWNRMDVSVYEQNDIKEPPEFSSSPETNLDNDEKDLKNNHENIEIETVFICEICTRDFNDRA*LWLHMRATHKELAAYACGVCLKICSDNTQLQSHLYMYHGKSKLLISEQRRYSCTICGRQHDSRKKLIAHVSIHNIDSGFDPAIFVQLNSNYYNENLNGTEGNEQVMDFDGEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSEQIIPLGDAAGSGNAPNINGNGNRAQYHLFFVCEICGSSHSSKWERWLHINNMHSNESSIKCEWENCGKIFATKSLRNDHLQHHLIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVVQLSAHVKAKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEMAAATAAAAVAADVACDNSNLNDTTNESVKFEHGNNRAVDFKLKCEQCPEHKFTTLDILRNHRRVVHNLFPCDLCVKYYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRYVPTMGGKDSQNCVVSKSLNMEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENAIRDHYEHVHNVPKDQLAVFEYRMDIGAKREDYETPDIIVKEEPDDLEFDEEMCDESSSDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKNNGDGKRRMRNRNNYECKNCKKQFSTKTLFWNHINACTRRNSVCRFDVPNNISTSILESHLKNNNQIQREEPVSLTNESNLNIPDFNLFEDINLQLSSQKPVPNLMPLSQVKSAGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGYFRCEKCQQGFASEEKLGEHATSCNGKSEFENHAVTADIEDNAKNDNDEKGSLIADETSVIEEEVEEADFESEGEGSRGIQNEENNSEEDNSDSDDSDSGSNSSSSENEGEEEEEEEEEEEEEEEEEEAEEEENENENENESDTRTEPDTRTSSRASGDSESCNSESDESDVDEAEMRAMQKKAPRLSDINRFRIHGEENSPAMEKYIEDQSTASVIAATGGDRIKQSTLNNLLIPGASANVDKFKTLRLQESTAATVSDVDFSNDNENDNEEDDNDENNENDEQKERGDGEDEGEGEGEGEGEGEGEDEGKGEGEDEDEDEDEDEDEDESEGEGTSEAEAESGEAEGEDNAEGEGEEEEEEEENDEDDDDDGPPVLSPIMPLLPENESEEHSNTMDRTRHKLSPMVSLNMDKLMEECEITEIKTDTENTVALSNASNFFAANNNDLSVTWDEDEERDCNSDVGDRDVMVMKNEEFDKEYTKRNINDLEGDDYEEDSADENVMDDRDGGGGDQVHEIHSLDGTVLMMTNDAEGNPILIEHNVLDIDNEDSNAEVAQYIYPDNAYEIEEEDEEDFATRNETDAMQGEIQGMSYIQDMSENDNSTGDDVEGDSNDAQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00869056;
90% Identity
iTF_00729511;
80% Identity
-