Lpop008315.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220505.1
- Location
- HG992152.1:2526424-2553193[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-79 1.1e-74 252.5 22.8 1 297 114 397 114 399 0.89 2 2 1 3.6e+04 -8.1 16.1 1 44 396 439 396 470 0.66
Sequence Information
- Coding Sequence
- ATGGGGCAACGATCTGAAATGGCAACGCCGGATAACAGTGATGAAGAGAGCGGAGAAGCCTTCACGGATGGAGATTTTGGGGATTCTGAAGAAGATATAATCGACCATAATGACTCAAAATCTCACATACCACTGAATGAAACTGTCAACGAAGATGTCAAGACAGTCAACGGTAATGACGCTTTAGATGATCCGGGTCCAGAAACGCCTAAAATGAATGGgagattaataagtgaaaatcAGCCTGATGAGGATCAAGGGATTTCAGAAATGCGAAGGGATTCACACAGCGAACAAATTCCTTCAATAGTTGGGATATTGGGAAATCAGCAAAATCACGCGGAACAGCGTTTGGCGGCGCGACGAGCGGCGCGTGCGGAGGCGCGCGAGATACGCATGCGCGAGCTTGAGAGGCAGCAGCGTGAACAGGAAGACCATGCAGACAAAGCCTACGACATGTATGCAGAGACGGTGGGGCGCCGCGCCGGCGGGCGGCTGGCGGCACTCAGCCCAGGAGCCGTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGTCGACGACGGGTTCAACGTCAAGGACCTCAGGCACGAGTTGAAAGAAGTTGAGGAGAAATTCCGCAAGGCGATGATCTTGAACGCCCAACTGGACAATGACAAGGCGGCGCTCGGCTACCAGCTGGAACTACTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTATGCACAGCTGCAGCGCGAGCACCGAGAGAAGTGCTCTGCCCACGAGCGTCTGAAGCGCGAGCACGCGTCTCTGGAGCGCGAGGTGGAGGCGGCGCGGGGGGCGGTGCGGGCGCGAGACGCGGCGGCGAACGCTGCGGGCTTCGCGTTCGTGGATGCCGCTGGGAGTGAGGAGGCTGGCATCGTCACCGGCACCGGCACCGCACCGCCACTAGCGCTCGTGTCGCATCGCGCCGAGCAGCTGCTCAACGATGCCGGGGAAGGCACGTTAGATGTACGATTGCAAAAACTGCTTAGCTCGAAGCAGGGTCTGGAGTCCGAAGTCCGCAAGCTGAAGCTCCAGCTGAACGAAGAGCGCGCCGCCAGGCACAACGGCGTCTCCAACCATCACGACCATGAATATGAGGGCGAACTGGAAGCTCTCCGCAAGTCGGTGTCTGAGGCGAAGGCGCGTGCTGCCCGCGCGGAGGCCGAGGCGGCTCTGCAGGCGGCCGCCACCGCGCGCCTCGAGGCACAGCTGCAGCGGCTGCGAGCGAGGCAGGACCATCAGGACGAGCACGAGGAGCTTCTCAAGCAGGAGCGACGCCGGCTGCAGCGAGAGgcAAGGGAAGCTCTCAACCGGGTCGAGGAGTTAGAGACAGAGAACAGTCACCTGACGAAGCGATTGGATAAGCTCAAGAATGCCAAGTCAGCTCTTCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEMATPDNSDEESGEAFTDGDFGDSEEDIIDHNDSKSHIPLNETVNEDVKTVNGNDALDDPGPETPKMNGRLISENQPDEDQGISEMRRDSHSEQIPSIVGILGNQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPGAVHSPRRSSEDSVDDGFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSAHERLKREHASLEREVEAARGAVRARDAAANAAGFAFVDAAGSEEAGIVTGTGTAPPLALVSHRAEQLLNDAGEGTLDVRLQKLLSSKQGLESEVRKLKLQLNEERAARHNGVSNHHDHEYEGELEALRKSVSEAKARAARAEAEAALQAAATARLEAQLQRLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- iTF_01010376; iTF_00063611; iTF_00859488;
- 80% Identity
- -