Ajug005866.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949126905.1
- Location
- OX421370.1:17008137-17030283[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-80 1.2e-75 255.0 21.6 1 297 114 402 114 405 0.88 2 2 1 2.4e+04 -8.4 16.1 1 44 401 444 401 469 0.68
Sequence Information
- Coding Sequence
- ATGGGGCAACGATCGGAAGTGGCAACGCCTGACAACAGTGATGAAGAGAGCGGTGAAGCGTTTACCGATGGGGATTTTGGCGACTCTGAGGAGGACGTCGTCGAACATAATGATTCTAAATGTCACATACCAGTGAATGAAACAGTAAACGAAGATGTAAAGGCCGTTAATGGTAATGATACTGTTGACGACCCGGGTCCAGAAATGCCTAAAATGAATGGGCGAAGGACAAGCGAGAACCAGCCTGACGACGATCAAGCGATGGTAGAAATGAGAAGAGATTCACACTGCGAACAGGTTCCGTCCATAGTTGGGATACTCGGAAACCAACAAAATCATGCGGAACAGCGTTTGGCGGCGCGTCGAGCGGCGCGTGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGTGAACAAGAAGACCATGCAGACAAAGCTTATGACATGTATGCAGAGACGGTGGGGCGTCGCGGCGGCGGGCGGCTGGCGGCGCTCAGCCCCGGCGGCGTGCACTCCTCGCCACGCCGCAGCTCCGAGGATTCCGTCGACGACGGCATCAGCGTCAAGGACCTCAGGCACGAGTTAAAAGAGGTTGAGGAGAAGTTCCGCAAGGCGATGATCCTCAACGCCCAACTGGACAATGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAACTTCACGAGGAATATGCGCAGCTGCAGCGCGAGCACAGAGAGAAATGCTCGGCGCACGAGCGTCTCAAGCGCGAGCACGCGTCTCTAGAGCGCGAGGTGGAGGCGGCGCGGGGGGCGGTGCGCGCGAGGGACGCCGCCGCGAACGCAGCGGGGTTCGCGTTCGTCGACGCCGCGGGGAGCGAGGGGATCGCGGGGGTGGGGGCGGCGGTGACGTCAGACGACACAGCACCACCGCTCGCGCTCGTGTCGCACCGCGCCGAGCAGCTGCTCAACGATGCTGGAGAAGGCACCTTAGACGTGCGATTGCAAAAGCTGGTTAGTTCGAAGCAAGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGTTGAACGAGGAACGCGCCGCCAGACACAACGGCGTGGCGAACCATCACGACCATGAATATGAAAGCGAACTGGAAGCTCTCCGCAAGTCAGTGTCGGAGGCGAAAGGGCGTGCAGCGCGAGCGGAGGCAGAGGCGGCGCTGCAGGCGGCCGCCACCGCGCGGCTCGAGGCGCAGCTGCAGAGACTGCGCGCCCGGCAGGACCACCAGGACGAGCACGAGGAACTGCTCAAGCAGGAGAGACGCCGGCTGCAGCGGGAGgcTAGAGAAGCTCTAAACAGAGTCGAAGAGTTGGAGACAGAGAACAGTCACTTGACGAAGCGACTGGACAAGCTCAAGAACGCCAAGTCGGCGCTTCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGEAFTDGDFGDSEEDVVEHNDSKCHIPVNETVNEDVKAVNGNDTVDDPGPEMPKMNGRRTSENQPDDDQAMVEMRRDSHCEQVPSIVGILGNQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGGRLAALSPGGVHSSPRRSSEDSVDDGISVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSAHERLKREHASLEREVEAARGAVRARDAAANAAGFAFVDAAGSEGIAGVGAAVTSDDTAPPLALVSHRAEQLLNDAGEGTLDVRLQKLVSSKQALESEVRKLKLQLNEERAARHNGVANHHDHEYESELEALRKSVSEAKGRAARAEAEAALQAAATARLEAQLQRLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- iTF_00858565;
- 80% Identity
- -