Lcon002300.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_949316025.1
- Location
- OX438919.1:42853281-42876429[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.06 2e+03 -1.3 0.5 254 281 69 96 46 102 0.70 2 3 3.5e-79 1.2e-74 252.3 24.5 1 297 114 393 114 396 0.89 3 3 1 3.4e+04 -7.0 12.8 1 44 392 435 392 467 0.49
Sequence Information
- Coding Sequence
- ATGGGGCAACGTTCCGAAGTAGCCACGCCTGACAACAGCGATGAGGAGAGCGGAGACGCATTCACCGATGGTGACTTCGGTGATTCCGACGAAGAAGTCGTCAAGCATAATGATTCTAAATCCCACATACCGGTCAATGAGACTGTTAACGAAGACGTGAAGACTGTTAATGGTAATGACGATTTGGATGATCCTGTTCCGGATGAAATTAAAATGGATGATCGGAGAATTAGCGAGAACCAAACTGACGAAGACAAGGAAATAGTAGAAGTGAGACGGGATTCGCACAGCGAACAAATTCATTCTATAGTTGGGATACTTGGAAACCAGCAAAATCATGCGGAACAGCGTTTGGCGGCGCGTCGAGCGGCGCGGGCGGAGGCGCGTGAGATACGCATGCGCGAACTGGAGAAACAGCAACGCGAGCAAGAAGACCATGCAGACAAGGCCTATGACATGTATGCAGAGACTGTGGGCCGGCGCGCGGGCGGGCGGCTCGCGGCGCTCAGCCCCGGCGCCGTACACTCGCCGCGCCGCAGCTCCGAGGACTCGGCGGACGACGGGTTCAGCGTCAAGGACCTCAGGCACGAGCTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGTTGGACAATGACAAGGCGGCGCTCGGCTACCAGTTGGAGCTGCTCAAGGATAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAGCACAGAGAGAAGTGTTCGGTGCACGAGCGCCTGAAGCGGTCGCACGCGTCGCTGGAGCGCGAGGTGGAGGCGGCGCGGGGCGCGGTGCGGGCGCGGGACGCGGCGGCGCACGCGGCGGGGTTCGCGTTCGTGGACGCGGCCGACACGCGCGACACACACGGTCACCACGCGCCGCCGCTCGCGCTCGTGTCGCACAGCGCCGAGCAGCTGCTCAACGACGCCGGGGAGGGCACGCTCGACGTGCGATTGCAAAAGCTGTTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTCAACGAGGAGCGAGCCGCGCGGCACAACGGCGTCTCCAACCACCACGACCACGAGTACGAGGGGGAGCTGGAGGCGCTGCGCAAGTCTGTGTCGGAGGCGAAGGCCCGAGCGGCGCGTGCGGAGGCGGAGGCCGCGCTGCAGGGCGCCGCCACCGCACGACTCGAGGCACAGCTACAGCGGCTCCGCGCACGGCAGGACCACCAGGACGAACACGAGGAGCTGCTCAAGCAGGAGCGCCGCCGTCTGCAGCGAGAGGCAAGAGAAGCTCTCAACCGAGTCGAGGAGTTGGAGACGGAGAACAGTCACCTGACCAAACGGCTGGACAAGCTGAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDEEVVKHNDSKSHIPVNETVNEDVKTVNGNDDLDDPVPDEIKMDDRRISENQTDEDKEIVEVRRDSHSEQIHSIVGILGNQQNHAEQRLAARRAARAEAREIRMRELEKQQREQEDHADKAYDMYAETVGRRAGGRLAALSPGAVHSPRRSSEDSADDGFSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSVHERLKRSHASLEREVEAARGAVRARDAAAHAAGFAFVDAADTRDTHGHHAPPLALVSHSAEQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARHNGVSNHHDHEYEGELEALRKSVSEAKARAARAEAEAALQGAATARLEAQLQRLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- iTF_00858565;
- 80% Identity
- -