Basic Information

Gene Symbol
nfxl1
Assembly
None
Location
HiC:1433249-1436373[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1 2.3e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 16 0.0052 1.2e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 16 6.2e-08 0.0015 18.9 14.4 3 19 186 202 185 202 0.95
4 16 9.1e-08 0.0021 18.4 11.0 3 18 239 254 237 255 0.91
5 16 1.5e-09 3.6e-05 24.1 11.7 1 19 290 308 290 308 0.99
6 16 1.9e-06 0.045 14.2 19.2 3 19 345 361 337 361 0.86
7 16 3.3e-05 0.78 10.2 20.3 1 18 395 412 395 413 0.97
8 16 1.2e-08 0.00028 21.2 16.9 1 19 422 440 422 440 0.99
9 16 1.9e-05 0.44 11.0 5.8 9 19 488 498 486 498 0.90
10 16 0.002 47 4.5 6.2 1 12 508 518 508 518 0.90
11 16 0.44 1e+04 -3.0 1.7 14 18 547 551 547 552 0.85
12 16 0.38 8.9e+03 -2.8 3.3 8 12 568 572 567 579 0.64
13 16 2.7e-06 0.064 13.7 4.6 1 11 588 598 588 599 0.97
14 16 0.4 9.3e+03 -2.8 1.3 15 18 613 616 612 617 0.84
15 16 0.00014 3.2 8.2 16.4 3 18 629 645 628 646 0.82
16 16 2.4e-07 0.0056 17.0 12.2 1 16 687 701 687 707 0.87

Sequence Information

Coding Sequence
ATGGCTAGGAGATATCGCGACGCGGCTGCAAAACTGCAGCAAAATGTTCAAAAACATTTAAAAGTTATGAAAGAAGTGTCCTCTTCAGAAGACGATGAACCATTCGACCAGAATGTTCTGGAAGGAGTATTCCAGAGTTACTGGCGAGGGGGCGGGGACAAACAGATGCTGAATAGAACAAAGAATCTTCTAGAAGAGGCTATAAGCGGCCGGTCTGTTACTTGTTTAATTTGTATCGGTTCTATCAAGCGAGTAGATGCTATTTGGACCTGTGATCATTGTTACTCATATTTCCATCTTTCATGTATACAAAAATGGTCGAACGATAGTATAAGTCTGCGAAGTGAAGAGAGTCATGGCCCCATTGCAGTGTTTAAACCGAAAAAAATTGAATGGTGCTGTCCAAAATGTAGACAATCGTATAGTAAAGAGGAAATACCTCGTAAATATAGATGTTTCTGTGGTAAGACTGATGATCCTCCTTATCATCCTTGGTTAATACCTCACACATGTGGAGAGGTGTGCGGTAAAAGATTATCGACTGGTGACAATTGTATGCATAAATGTCTTTTGCTCTGTCACCCTGGTCCTTGCCCCCCGTGCCCTCAGACAGTAAACGGAGTTTGTTACTGTAGTAAAGAACGTAAGAAAGTAAGATGCAGTGTCGCTAAATGGTCATGTATGCAACAATGTAAAAAATTATTACCTTGTAAATCTCATGCATGTGAAAATATATGTCACATGGGGGACTGTCCCCCTTGCAATTATTCAAGCTTACAGTCTTGTCAGTGTGGTGTGGAGAAGACTAAGAGACCTTGCAACGACTTAAAATGGCAGTGTGCCAAACAATGTAACAAGCCCTTTACTTGTGGGTATCATAAGTGTGAAAAGGTATGCCATTGGGGTAGTTGTGGGACATGTCCAAACTCAGGAATCATGTCCTGTCCCTGTGGAGCTAACGAGCGTTTCATTCAGTGTCCTGATTCTATTGAAACCTGTGTTAGCACTTGCGGTAAGAAACATGATGACTGTGAGCATAATTGCCCTGCCAAATGCCATAAAGGGCCATGTCCACCATGCCAAGTGTTGATTGAAAAACAATGTAAATGTTCCTTGCATACGAGATCCCTTCCGTGCAGCAAAGAGTTCAGATGTGAAACAAAATGTCGAGGTACTAGACCGTGCGGTAAACATGGATGTGGAAGGAAATGCTGCAATGGAAATTGTCCTCCCTGTGAAAAAGTGTGCGATAAGCCATTACAATGTGGTCGGCATAAATGTACTACTATCTGTCATCATGGCCCTTGCTATCCTTGTCCGTTAGAATCAAAAGTTACTTGTCGGTGTAAAGAAACATACGTCACAGTACCATGTGGTAGGGAAAAGCACACAAAGCCACCCAAATGTAATCTCCCATGTAAAATTAAATATAAATGTGGTCACATAGACGAGAATAAACATGTTTGCCATTTTGGAGATTGTCCACCGTGCAAAGCAATTTGCAATAAGACATATGGAAAATGCAGCCATAGTTGTACCGCTGTTTGCCACGAATATGTTTTAGTTGTTTTTAAACAGGTGGAAAAACCAGCTACACCTTGGGAAATTCAACCGCCAAAGTCTAAAATAGTAGCTCTTGATTGCTCTCCATGTGAAGCCCCAGTTACAGTGACATGCTTTGGAGAACATGAAACGGACAGTCAACCTTGTCATAAAGCATGTCGACGGCCTTGTGGACGTGAATGTGGTCGGCCCATCGCATGTGGCAATCATTCTTGTGAATTATTATGTCACTTGTATCAATCTAATCCTGACTACCCAAACGTGCCTTACACTTGCAAACCGTGTAACCGAGAGTGTTCAGCGATCCGTCCAGAGAAATGCACACATAAATGTGCAAAACGCGGCTGCCACCCAGGCCCGTGTCCCCCATGTGATACTCTAGAAAGAATTCTGTGTTATTGCAGTGTAACAGATATTTATTTACGTTGTCGTGAACTTTCAACGGCGACGGATGAAATGCTCAGTTGTAAACAACAATGCTCAAAAAATCTGGACTGCGGTCACCGTTGTAAGAATTTATGTCATGCCGGGCCCTGTGGGCAAAACCAGACTTGTGTTAGAAAGACTAAAGTACACTGTCCTTGTGGTAATTTGAAGAAAGAAGCCCCATGTAACTCTGTTCGAAAAGGAGATGTCTCTATCAAGTGCGATGAAAGTTGTAATGCTAAAAAAATTGCTGCAAAATTAGAAAGAGAGAAAGAAGAAAAGAGATTAAAAGAGTTAGAAGAAGAGAGAAATCGTAAAGAATTAGAAGAATACGAATGGAAACTTAGTGGAAAAAAGAAGAAATACAAGGAAAAAAGAATTGTCGTTGATAAGGATGACCGTAATGTGTTTCAGAAATATTGGGTTCCTATTTTATCAATATTGGTAGTTATTTTAGCTGGCACTTATTACATTTTTTATATTTAG
Protein Sequence
MARRYRDAAAKLQQNVQKHLKVMKEVSSSEDDEPFDQNVLEGVFQSYWRGGGDKQMLNRTKNLLEEAISGRSVTCLICIGSIKRVDAIWTCDHCYSYFHLSCIQKWSNDSISLRSEESHGPIAVFKPKKIEWCCPKCRQSYSKEEIPRKYRCFCGKTDDPPYHPWLIPHTCGEVCGKRLSTGDNCMHKCLLLCHPGPCPPCPQTVNGVCYCSKERKKVRCSVAKWSCMQQCKKLLPCKSHACENICHMGDCPPCNYSSLQSCQCGVEKTKRPCNDLKWQCAKQCNKPFTCGYHKCEKVCHWGSCGTCPNSGIMSCPCGANERFIQCPDSIETCVSTCGKKHDDCEHNCPAKCHKGPCPPCQVLIEKQCKCSLHTRSLPCSKEFRCETKCRGTRPCGKHGCGRKCCNGNCPPCEKVCDKPLQCGRHKCTTICHHGPCYPCPLESKVTCRCKETYVTVPCGREKHTKPPKCNLPCKIKYKCGHIDENKHVCHFGDCPPCKAICNKTYGKCSHSCTAVCHEYVLVVFKQVEKPATPWEIQPPKSKIVALDCSPCEAPVTVTCFGEHETDSQPCHKACRRPCGRECGRPIACGNHSCELLCHLYQSNPDYPNVPYTCKPCNRECSAIRPEKCTHKCAKRGCHPGPCPPCDTLERILCYCSVTDIYLRCRELSTATDEMLSCKQQCSKNLDCGHRCKNLCHAGPCGQNQTCVRKTKVHCPCGNLKKEAPCNSVRKGDVSIKCDESCNAKKIAAKLEREKEEKRLKELEEERNRKELEEYEWKLSGKKKKYKEKRIVVDKDDRNVFQKYWVPILSILVVILAGTYYIFYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00802512;
80% Identity
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