Basic Information

Gene Symbol
nfxl1
Assembly
GCA_905220545.1
Location
HG992201.1:1500049-1502523[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1 4.7e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 15 0.0052 2.5e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 15 1.2e-07 0.0059 18.0 14.7 4 19 187 202 185 202 0.95
4 15 2.3e-08 0.0011 20.3 13.1 3 18 239 254 237 255 0.91
5 15 2.7e-09 0.00013 23.3 12.8 1 19 290 308 290 308 0.99
6 15 1.9e-06 0.09 14.2 19.2 3 19 345 361 337 361 0.86
7 15 3.3e-05 1.6 10.2 20.3 1 18 395 412 395 413 0.97
8 15 7.2e-09 0.00034 21.9 17.3 1 19 422 440 422 440 0.99
9 15 3.7e-05 1.7 10.1 6.1 9 19 488 498 486 498 0.90
10 15 0.00088 42 5.7 6.2 1 12 508 518 508 518 0.90
11 15 0.16 7.4e+03 -1.5 3.5 14 18 547 551 547 552 0.87
12 15 0.088 4.2e+03 -0.7 0.5 8 12 568 572 567 579 0.80
13 15 2.7e-06 0.13 13.7 4.6 1 11 588 598 588 599 0.97
14 15 0.00014 6.5 8.2 16.4 3 18 629 645 628 646 0.82
15 15 2.7e-07 0.013 16.9 12.9 1 16 687 701 687 706 0.89

Sequence Information

Coding Sequence
ATGGCTAGGAGATACCGCGATGCCGCTGCAAAATTGCAGCAAAATGTCCAAAAACATTTACAAGTTATGAAAGAAGTGTCTTCTTCCGAAGACGACGAACCATTCGACCAAAATGTTTTGGACGGAGTTTTCCAGAGCTATTGGCGTGGGGGTGGTGACAAACAGATGCTGAATAGAACGAAGAATCTTCTTGAAGAAGCGATAAGCGGCCGGTCTGTGACATGTTTAATTTGCATCGGTTCCATCAAACGTGCAGATGCAATCTGGACCTGCGACCATTGCTTCTCGTATTTTCACCTTTCGTGTATACAAAAGTGGTCAAACGATAGTATAAGTCTACGCAGTGAAGAAAATCACGGTCCCATTGCTGTGTTTAAGCCGAAAAAAATCGAATGGTGCTGTCCGAAATGCCGACAATCGTACAGTAAGGAGGAAATACCTCGGAAATATCGTTGTTTTTGCGGTAAGACTGACGACCCTCCTTATCATCCTTGGTTAATACCCCACACTTGCGGAGAGGTTTGCGGCAAGAGATTATCCACCGGAAATAACTGTTTACACAAATGTCTTCTACTCTGTCATCCCGGCCCTTGCCCTCCATGTCCTCAGACAGTAAACGGAGTTTGTTACTGTGGCAAAGAACGTAAGAAAGTAAGGTGCAGTTCTGGTAAATGGTCTTGTATGCAGCAGTGTAAGAAATTGTTACCTTGTAAGTCTCATACATGTGAGAACACATGCCACCTAGGAGATTGCCCGCCTTGCAATTATTCCAGCCTACAGTCTTGTCAATGCGGTGCTGAGAAGACTAAACGACCATGTAACGATTTAAAATGGCAGTGTAAGAAGCAATGTAACAAGATGTTTTCATGTGGGTATCATAAATGTGATAAAATATGTCATACAGGTAGCTGTGGGACTTGCCCTAACTCGGGAATTATGTCTTGTCCCTGTGGAGCCAACCAGCGTTTCATCCAATGTCCTGATTCCATTGAGACCTGCGTAGGTACATGTGGTAAAAAACATGACGATTGTGAGCACAATTGCCCGGCGAAATGTCATAAAGGGCCGTGTCCACCCTGCCAAGTCTTGATTGAAAAGAAGTGTCAATGTGCAACACACACAAGATCACTGCCATGTAGTAAAGAGTTTAGATGTGAAACAAAATGTAGAGGCACTAGGATGTGCGGTAAACATGGATGTGGAAGAAAATGTTGCAATGGAAACTGTCCACCGTGTGAAAAGGTGTGTGATAAACCTCTACAGTGCGGTAGACACAAATGTACTACAGTCTGCCATCATGGCCCTTGCTATCCTTGTCCCTTAGACTCAAAAGTTACATGCCGTTGCAAGGAAACCTTTGTAACCGTACCGTGCGGTAGGGAAAAGCACACGAAACCACCTAAATGTAATCTCCCTTGCAAAATTAAGTATAAATGTGGTCACATAGATGAGAATAAGCACACATGTCATTTCGGTGACTGTCCACCGTGCAAAGCTATTTGTAATAGGACATACGAAAAATGCAGCCATAATTGCAAAGCAGTGTGCCATGAgtatgttttggttgtatttaAACAGGTGGAAAAACCGGCTACACCGTGGGAATTTCAACCGCCAAAGTCTAAAATAGTAGCCATTGATTGTCCACCATGCGAAACCCCAGTAACAGTCACATGTTTTGGGGAACATGAAACAGACAGCCAACCTTGTCATAAAGCTTCTCGAAGACCTTGCGGTAGAGAGTGCGGGCGACCACTGGCTTGTGGTAACCATTCATGTGAGCTGCTATGCCACTTGTATCAATTTGATCCTGACTACCCAAATGTGCCTTACACTTGCAAATCGTGTAACAGAGAGTGTTCAGTTATCCGTCCAGCAAAATGTACTCACAAATGTGCAAAACGTGGCTGCCACCCGGGCCCTTGTCCTCCGTGTGATGTGTTAGAGCGAGTGCTGTGCTATTGCGGTATAACAGATCTTTATATGCGTTGTCGTGAACTTTCGACGGCAACAGAAGAAATGCTCAGTTGTAAACAGCAATGTTCGAGAAACCTAGACTGCGGTCACCGTTGTAAAAATGTATGCCACTCTGGGCCGTGTGAGCAGAACCAGACTTGTATTAAAAAGACTAAAATACACTGCCCTTGTGGTAATTTGAAGAAAGAAGCCCCTTGCAACTCAATCCGAAAGGGCGATGTATCCGTCAAATGTGATGAAAGTTGTAACGCTAAAAAGTTAGCAGCAAAATTAGAAAgagaaaaagaagaaaagagATTAAGAGAGTTAGAGGAAGAGAGAAATCGTAAAGAATTAGAAGAATACGAATGGAAACTGAGTGGAAAAAAGAAGAAATACAAAGAGAAAAAAGTTGTCGTAAACAGAGATGATCGTAACGTGTTACAGAAATATTGGGTTCCTATTTTGTCAATACTTGTAGTTATACTAGCTGGTATTTATTAcgtttttaatgtctag
Protein Sequence
MARRYRDAAAKLQQNVQKHLQVMKEVSSSEDDEPFDQNVLDGVFQSYWRGGGDKQMLNRTKNLLEEAISGRSVTCLICIGSIKRADAIWTCDHCFSYFHLSCIQKWSNDSISLRSEENHGPIAVFKPKKIEWCCPKCRQSYSKEEIPRKYRCFCGKTDDPPYHPWLIPHTCGEVCGKRLSTGNNCLHKCLLLCHPGPCPPCPQTVNGVCYCGKERKKVRCSSGKWSCMQQCKKLLPCKSHTCENTCHLGDCPPCNYSSLQSCQCGAEKTKRPCNDLKWQCKKQCNKMFSCGYHKCDKICHTGSCGTCPNSGIMSCPCGANQRFIQCPDSIETCVGTCGKKHDDCEHNCPAKCHKGPCPPCQVLIEKKCQCATHTRSLPCSKEFRCETKCRGTRMCGKHGCGRKCCNGNCPPCEKVCDKPLQCGRHKCTTVCHHGPCYPCPLDSKVTCRCKETFVTVPCGREKHTKPPKCNLPCKIKYKCGHIDENKHTCHFGDCPPCKAICNRTYEKCSHNCKAVCHEYVLVVFKQVEKPATPWEFQPPKSKIVAIDCPPCETPVTVTCFGEHETDSQPCHKASRRPCGRECGRPLACGNHSCELLCHLYQFDPDYPNVPYTCKSCNRECSVIRPAKCTHKCAKRGCHPGPCPPCDVLERVLCYCGITDLYMRCRELSTATEEMLSCKQQCSRNLDCGHRCKNVCHSGPCEQNQTCIKKTKIHCPCGNLKKEAPCNSIRKGDVSVKCDESCNAKKLAAKLEREKEEKRLRELEEERNRKELEEYEWKLSGKKKKYKEKKVVVNRDDRNVLQKYWVPILSILVVILAGIYYVFNV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00802512;
90% Identity
iTF_00843994;
80% Identity
-