Iinq008216.1
Basic Information
- Insect
- Ischnus inquisitorius
- Gene Symbol
- -
- Assembly
- GCA_963924025.1
- Location
- OZ001248.1:1153902-1158388[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.02 1.7 9.5 2.0 1 23 348 370 348 370 0.95 2 19 0.032 2.6 8.9 0.6 2 23 417 438 416 438 0.95 3 19 0.00078 0.065 14.0 0.6 1 23 510 532 510 532 0.97 4 19 0.0044 0.37 11.6 1.1 2 23 537 558 536 558 0.96 5 19 3.3e-05 0.0028 18.3 0.6 2 23 652 673 651 673 0.97 6 19 1.9e-05 0.0016 19.1 2.0 1 23 678 700 678 700 0.96 7 19 0.00038 0.032 14.9 0.2 1 21 706 726 706 730 0.92 8 19 2.5e-05 0.0021 18.7 2.5 1 23 814 837 814 837 0.95 9 19 5.9e-05 0.0049 17.5 3.9 1 23 902 924 902 924 0.97 10 19 0.00034 0.028 15.1 0.7 1 20 929 948 929 950 0.94 11 19 0.11 9.5 7.2 0.3 2 23 961 982 961 982 0.95 12 19 1.5e-05 0.0013 19.3 0.7 2 23 1021 1042 1020 1042 0.97 13 19 3.1e-05 0.0026 18.4 1.6 1 23 1047 1069 1047 1069 0.95 14 19 0.00023 0.019 15.7 2.0 1 23 1075 1097 1075 1097 0.98 15 19 5.5e-06 0.00046 20.7 0.4 1 23 1113 1135 1113 1135 0.95 16 19 1.8e-06 0.00015 22.3 0.3 1 23 1141 1163 1141 1163 0.99 17 19 3.3e-05 0.0028 18.3 0.3 1 23 1169 1191 1169 1191 0.98 18 19 0.00018 0.015 16.0 4.1 1 23 1197 1219 1197 1219 0.96 19 19 0.013 1.1 10.2 0.4 1 20 1225 1244 1225 1246 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTACAAATTGATACGGCGGAAGATGCTCAAAACGACGATGCCATAGACACGACAGTGCCGGAGGTATGCCGTGTTTGTTTGCTCGGCAATTTGTTGATGCGAGATCTATTCGTCGAGAACGAAGTTGTTTCACTGTCGACGAAGGCTATGAGCTTCGCGAGCGTGAAGATGCTACCCGGCGACGGCTTGCCGGCGCAAGTCTGCTGCGAGTGCGCAAACAAATTGGATAACGCTTACGAATTTAAGCTCCAAGTCGAACAGGCCGATAATGTACTGCGACAGAGGTACGATTCTCTCAATATCAAGGAAGAACTTTTCTTCAACGAGGTCGAAGTGCATCTAGACGAGggcgaaagaaacgaagatcACAGCACGATCGACGTTGACGCACATTATCAAGCGACCATGGATAGTTTAAGCGCCGAGGACGGCGAGGATGACAAACCTACCCTTTTGAAGGATCATCTGGCTCTGCTACAAGTAGAGAAACTCTCCGAAGAGCAATGCGCCGCCGAAGCTgaCGAAAAAGAAGCGGAAGAAATAATCGAGCAATCGAACGTGGCGGCTATACTCGAATCCAACGACGATCACGCGGAGTTTCTTCACGACGAGAATCCCGAAGCGATGGCCGAAGTTTACCGACAATCCGTGAAAGCCGAGGGCATGAACGACACCGAGGGAATTACCATCGAGGAGCACAATTACATAATGCAGCAGGGCTACACGTTGACGAGAAACGAGGAGGAATTGGCGCAGGATAGCGTCGACTCGGTCGCTCACGAGTCGACCGAATATCTGACACTGATCGACGACGATCCGAACGAGGCCGAGACGCTGAACGAGGTGAAGATCGAGGATTCGCATCGGGAGGAAGAGCCGAGCGAGAATCTCGAGAGCTCGCCCAGCGAGACGCGTCGGAGCAAAAGAAAGTCGATCAAACGCGCGCGCAACTCGGACGAGGAGAATTACTTTGAGAATCTGAATCTCAGCAGCAGATTGAAAAAGACGCAGAGCGAGAAGCCAGAAAAAGTGTTTCTCTGCTATCTGTGCGACAAGCAATTTATCTCGAAGGAAATTCTCAAGGAGCACATGCACTCGCACGAGGAGGTGAGACGCGCGTTGTCGTTGAAGAAGACggaaaagattgaaaaaaaacacgcgacACCGACGAAATCGAGCGCGGCCGGCGCGTCGGTTGGTACAtcggcttcgtcgtcgtcttccgGCAAACGAGCCAACAAGTGTCCGTACTGCGGCAAAGAGTATCTCTACGTGATATCGTTCAACAAGCATTTGAAGCAGCACGAGAGAAACAACGACTCGTCGAAGGACGCTTCGATGTCGATGGAGGAATCGTTGAACGGTGACGAGAATTCTTCGGATTTCGTCGGTTACGAGGACACGCGCATGTCCGAAACGAGTAGCAGAATCGAGCAGGGAAACGAGGAGGATGCGGATGAGGCTGCGAGTCCCGAGCGtaagaaacgacgaagaaaatccgTGCGTTCCGAGGTGATTTATTATTGCGACAAGTGCACGGAAAAATTCTCCACGAAGCGCGCACTCGGAGAGCACACGATCGTGCACAATACAAGCCTCAAGTGCAACACGTGCGATCGAGAATTCGACGCTCTCGAAAAGCTTCGCCGGCATCGTTCGCAGCACGTCGTCGAGGGCGTTCTGTCGGAACAAGACTTCGTCGATGACATTTACGAGAGAGAATTCGACAGCGAGATCCCGGACGAAGGCGCGAACGTCATTTACGAAGGCGCCGAAATACCCGAGACCCATCTTGTGGCCGAGAGTCAGGATCAGGATTGCGAAGAAGAGACGGAAGCTATATTGGAGTCGAGCGTCGAAAACGAGTGGCATCTCGAGATAGcggaaaacgagaacgagagagacagagaaatgCACGAGACTCAAACGGGCGAGATCGAATTGAAGTGTCCGAACTGTGCGACGAGCTattcgaacaaaaaatcattggcCCGGCACATGGAGAGCCACGAGGGTACGACGTACTCGTGCAAGATTtgcaaacaaaaattcatccgCAAGGATTATCTTCAGCGTCACGTTGAGCAACACGGCAGAACGAAGTCGTTCAAGTGCACGGAATGCGGCAAGATATTCGGCAACGAATTGACGCTCCGCAATCACTTGATCGCGACAAGTCACAAGACTATAATACACGGTCAGGAATACGATCCGAACAAGAGATTGAAGCGCGTCGCCGCGAAGGCAGCGCAGAAGATAATCGACAAGATCAAAACGGAAGACGATCTCGAGGAGTACGGCGAGGACGAGGAAAGCGCGGTGGACGATAGAAATTCCAAGGGTAACGGACGATGGGGCAAAAACGAGGTAAAGGTACATCCGACAGCGTCGTCGAGAAAGGCACAGCATCGGAATCGTCGAAGATCCGATTTCGAGTGCGAGACATGCGGACGCAAGTGCAGCTCGAAGGCTTCGTTGACGAAGCACATGGAGCAGCAGCACGTCaaaggagaaaaattcgatcgcgCGCCGAGGATCGAAAAGAGCCCGAAGAACAGTATTGCGGAAGTTCGCGAGAGGTCAGCCGGTGTCGCGAAGAACgatcgcgtcgacgacgacgtcaacgaggacgacgacgaggaggaggacaACAATTCCGATTTCGAGAGCGGTCTCGACTGGCCGATGGACAATCACGAGTGTCCGACgtgcaagaaaaaatacagTACGAAAAAGTCGCTTCTTCGTCATCAGTTGTTGCACGAGGAGCCGAATTTCGAGTGCGACATATGCAACGTCAAGTTTTATCGCAAAGACAAGCTCAAGGCCCACTACGACAAGTGCTCGGAGAAAAATCCGGATCAGGTGAGAAAATGCAACATATGCGGCGACAGCTTCGAGAACAACGAGATTCTCAAGGAGCATCGGGGTAAGCACGTCGACGAGGGAATATTGACGGAGGAGGATCTGCGCGACATCGAGCCGGGTACCGACGATAGGAAAGAGAGCGGCAAAGTCGCGAGAAAGCGTCGCACCGACATAGTCGGTCTCGAGTGCACAGAGTGCAACAAGCGTTACACGTCGCGCAAGGGATTGCTCCGGCACATACAGGTGCACGAGGgtaaaaaatatctttgcgacATATGCCCGAAGAAATTTTATCGACGGGAACATCTAAAGATTCACGTTGCCAAGCACAATATGATCAAGCCATACAAGTGCACGCGTTGCACGAAACGCTTCATAAAGGAGGAACAATTGGCGAATCACTTGTCGAAGCACGATCGAACATTCAAGAAGACAAAGGAGACCGACAGTTCGAAGAGATTCTTATGCGAAATATGCTCGAAGAGTTTCACCCAATCGACCACTCTCATAGCCCATCTCAGAGCTCACAACGGCATCAAACCGTACGTGTGCGAAGTCTGCGCGAGGCCCTTCACCACGAACGCTTATCTGAAGATGCACATGCGAACGCACACGCAGGAGAGACCCTACAGTTGTCAGTATTGCTCGAGAGCCTTCGCCCGCGCCGACACGCTCGCGAATCATTTGACCTCGCACACCGGCGAGGCGAAGTATCACTGCAAGTATTGTCCGAAAAATTTTCGGCGCTTGAAGTCATTGAAGGAGCACGTCTTCATTCACACGGGACAGCGGCCCTACGCTTGTCCGACTTGCGATCGTCGTTTCAACAACAACGGCAGTCGCTACGCTCACAGCAAGAGATGCAAGCAGAATTCGTTGCAGAATCAAAACCGCAGTCAGGCAACGATGCCAAACACTATCGTGCAGAACGTGACGGCCGCCCAACCGATCAGGATACATCAGATAAGCGGCGAGCACGGGACAACGCAGATGCAGGTCGTCAAATCGCAGAGCATAAAGACAATAACGATCGCGAGGCCGAGCGATCAGTTGAGCGCTCATCAAGTGATGCAGCATCAGGAAATACTCATGCCGCTCATTCTGCCGCTGACCGTGACCCTCaccgacgtcgacgaggaagTCATACTTCCCGAGGGTACCAAAATATTCACCACGGCTTGA
- Protein Sequence
- MDAVQIDTAEDAQNDDAIDTTVPEVCRVCLLGNLLMRDLFVENEVVSLSTKAMSFASVKMLPGDGLPAQVCCECANKLDNAYEFKLQVEQADNVLRQRYDSLNIKEELFFNEVEVHLDEGERNEDHSTIDVDAHYQATMDSLSAEDGEDDKPTLLKDHLALLQVEKLSEEQCAAEADEKEAEEIIEQSNVAAILESNDDHAEFLHDENPEAMAEVYRQSVKAEGMNDTEGITIEEHNYIMQQGYTLTRNEEELAQDSVDSVAHESTEYLTLIDDDPNEAETLNEVKIEDSHREEEPSENLESSPSETRRSKRKSIKRARNSDEENYFENLNLSSRLKKTQSEKPEKVFLCYLCDKQFISKEILKEHMHSHEEVRRALSLKKTEKIEKKHATPTKSSAAGASVGTSASSSSSGKRANKCPYCGKEYLYVISFNKHLKQHERNNDSSKDASMSMEESLNGDENSSDFVGYEDTRMSETSSRIEQGNEEDADEAASPERKKRRRKSVRSEVIYYCDKCTEKFSTKRALGEHTIVHNTSLKCNTCDREFDALEKLRRHRSQHVVEGVLSEQDFVDDIYEREFDSEIPDEGANVIYEGAEIPETHLVAESQDQDCEEETEAILESSVENEWHLEIAENENERDREMHETQTGEIELKCPNCATSYSNKKSLARHMESHEGTTYSCKICKQKFIRKDYLQRHVEQHGRTKSFKCTECGKIFGNELTLRNHLIATSHKTIIHGQEYDPNKRLKRVAAKAAQKIIDKIKTEDDLEEYGEDEESAVDDRNSKGNGRWGKNEVKVHPTASSRKAQHRNRRRSDFECETCGRKCSSKASLTKHMEQQHVKGEKFDRAPRIEKSPKNSIAEVRERSAGVAKNDRVDDDVNEDDDEEEDNNSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILKEHRGKHVDEGILTEEDLRDIEPGTDDRKESGKVARKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLANHLSKHDRTFKKTKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNSLQNQNRSQATMPNTIVQNVTAAQPIRIHQISGEHGTTQMQVVKSQSIKTITIARPSDQLSAHQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00397499; iTF_00398271; iTF_01364834; iTF_00058116; iTF_00058876; iTF_00059608; iTF_00905569; iTF_00721429;
- 90% Identity
- iTF_00398271;
- 80% Identity
- -