Carm024642.1
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- -
- Assembly
- GCA_963971235.1
- Location
- OZ020235.1:8485860-8490328[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.013 2 10.1 2.1 1 23 348 370 348 370 0.95 2 19 0.031 4.7 8.9 0.6 2 23 417 438 416 438 0.95 3 19 0.00083 0.12 13.9 0.6 1 23 510 532 510 532 0.97 4 19 0.0072 1.1 10.9 0.7 2 23 537 558 536 558 0.96 5 19 1e-05 0.0015 19.9 1.4 2 23 651 672 650 672 0.97 6 19 9e-06 0.0013 20.1 2.7 1 23 677 699 677 699 0.96 7 19 0.00039 0.057 14.9 0.2 1 21 705 725 705 729 0.92 8 19 2.5e-05 0.0037 18.7 2.5 1 23 815 838 815 838 0.95 9 19 5.9e-05 0.0087 17.5 3.9 1 23 899 921 899 921 0.97 10 19 0.00034 0.05 15.1 0.7 1 20 926 945 926 947 0.94 11 19 0.002 0.29 12.7 0.5 2 23 958 979 958 979 0.96 12 19 1.5e-05 0.0023 19.3 0.7 2 23 1018 1039 1017 1039 0.97 13 19 3.1e-05 0.0046 18.4 1.6 1 23 1044 1066 1044 1066 0.95 14 19 0.00015 0.022 16.3 2.0 1 23 1072 1094 1072 1094 0.98 15 19 5.5e-06 0.00081 20.7 0.4 1 23 1110 1132 1110 1132 0.95 16 19 1.8e-06 0.00026 22.3 0.3 1 23 1138 1160 1138 1160 0.99 17 19 3.3e-05 0.0049 18.3 0.3 1 23 1166 1188 1166 1188 0.98 18 19 0.00018 0.027 16.0 4.1 1 23 1194 1216 1194 1216 0.96 19 19 0.013 1.9 10.2 0.4 1 20 1222 1241 1222 1243 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTACAGATTGATACGGCGGAAGATGCTCAAAACGACGAGGCCATAGATACGACAGTGCCGGAGGTATGCCGCGTTTGTTTACTCGGCAATTTGTTGATGAGAGACCTATTCGTCGAGAACGAAGTTGTTTCACTGTCGACGAAGGCGATGAGTTTCGCGAGCGTCAAGATGCTACCCGGCGATGGTTTGCCGGGACAAGTCTGCTGCGAATGCGCAGACAAATTGGATAATGCTTATGAATTTAAGCTGCAAGTGGAACAGGCGGACAACGTACTGCGACAAAGATACGATTCTCTGAATATCAAGGAAGAACTTTTCTTCAATGAGGTCGAAGTCCATCTAGATGAAGGGGAACGGAGCGAAGATCCCCATACGCTTGAGGTTGACGCGCATTATCAAGCTACCGTAGATAGTTTGACCGCCGAAGATGCCGAGGATGACAAACCTACACTTTTGAAGGATCATCTGGCTTTGCTACGAGTAGAGAAACTCTCGGAGGAGCAATGTGCCGTTGTAactgaccAAAAAGAATCGGAAGAAATGGTCGAACAATCGAACGTAGCGGCTATTCTCGAGTCCAACGACGATCACGCGGAGTATCTTCACGACGAAAATCCTGAAGCGATGGCCGAAGTTTACCGACAATCTGTGAAAGCTGAGGGTATCAACGACACCGAAGGCATAACGATCGAGGAGCACAATTATATAATGCAGCAGGGGTACACGTTGACGAGAAACGAGGAAGAATTAGCGCAGGATAGCGCCGATTCTGTTGCTCACGAGTCCGCCGAATATCTGACGCTGATGGACGACGATCCGAACGAAGTGGAGACGCTGACCGAGCCGAAGATCGAGGAGTCACATAGGGAGGAAGAGCCGAGCGAAAAACTCGAGATTTCGCCTAGCGAAACTCGTCGCAGTAAAAGAAAGTTGATAAAACGGGCGCGGAACTCGGACGAGGAAAATTATTTCGAGAATCTGAATCTCAGCAGTAGATTGAAAAAGACGCAAAGCGAAAAGCCGGAAAAAGTATTTCTCTGTTATCTGTGCGACAAGCAATTTATATCTAAGGATATACTAAAAGAGCACATGCACTCGCACGAGGAGGTGAGACGCGCGTTGTCGTTAAAGAAAAGcgaaaaactagaaaaacgaCACTCGACATCGACGAAATCGAGTGGAGCCGTTGCGTCGGTGGGTCAATCGGGTTCCTCATCGTCTTCCGGTAAACGAGCGAACAAGTGTCCCTACTGCGGCAAAGAATATCTCTACGTTATATCGTTCAACAAACATTTGAAACAACACGAGAGAAACAAAGATTCGTCGAAAGACGCTTCGATGTCGATGGAAGAATCGTTTGACGGTGACGAGAATTCGTCGGATTTCGCTGGTTACGAAGACACACCAATGTCCGACACGAGAAGCAGAATAGAacaagaaaacgaagaagatgcGATCGACGATTCGAGTCCCGAACGTAAGAAACGACGGAGAAAATCCGTCCGTTCCGAGGCGATATATTATTGCGACAAATGTACGGAAAAATTCTCCACGAAGCGCGCACTCGGCGAGCACACGATAATCCACGATACGAGTCTGAAATGCAACACGTGCGACGAAGAATTCGACGCTCTCGAGAAGCTTCGTCGACATCGTTCGCAACACGTTGTCGAAGGGGTTCTGACGGAACAGGATCTCGTCGACAACGTTTACGAGAGAGAATTCGAAAGCGAAGTCCCAGACGAAGGAGTAAACGTTATGTACGAAGATACGGAAATGTCCGAAACGCATCTCGTAACCGGAAGTCAGGATCAACAACGCGAAGAAGAAACCGAAGCAATATTGGAGTCCGGCGTGGAGAACGAGTGGCATCTCGATGTACCGGAAGCCGAAAGCGATAATCGAGAAATTAACGAATCTCGAAGCTCCGAAATCGAATTAAAGTGTCCGAATTGTCCGATGAGCTATTCGCACAAAAAATCATTAGCCCGACACATGGAGAGTCACGAGGGTACGATATACTCGTGTAAAATTTGCAAACAAAAATTCACTCGTAAGGATTATCTTCAGCGTCACGTCGAGCAACACGCGAGAACGAAGTCCTTTAAATGCACGGAATGCGGCAAGATATTCGGCAACGAATTGACGCTGCGAAATCATCTGATTGCGACGAATCACAAGACGATAGTTCACGGACAGGAATACGATCCGAATAAGCGATTGAAACGAGTCGCCGCGAAGGCCGCGCAGAAGATAATCGATAAGATTAAAACGGAAGACGGTCTCGAGGAGTACGGCGAGGAGGAGATGGAGGACACCGCTGTAGAGGGTAGAAATTCAAAGGGTAACGGGCGATGGGCGAGAAACGAGGAAAAAGTACATCCGACAGCGTCGTCGAGAAAGGCGCAGCATCGCAATCGTCGAAGATCCGATTTCGAGTGCGAGACTTGCGGACGCAAGTGCAGTTCGAAGGCCTCGTTGACGAAGCACATGGAGCAGCAACACGTTAAAGGGGAAAAATCGGATATCGTaccgaaaatcgagaaaatcgggAAAAACAATATTTCAGAAGTTTGCGAGAGGTCTACGGGTGTCGCGAAGGACGATCGCATcgacgaagacgatgacgaAGAGGAGGACAACAATTCCGATTTCGAAAGCGGTCTCGACTGGCCGATGGATAATCACGAATGTCCGACTTGCAAGAAAAAATACAGTACGAAAAAATCACTTCTTCGTCATCAATTGCTGCACGAGGAGCCGAATTTCGAATGCGACATTTGCAACGTTAAATTTTATCGGAAAGACAAACTTAAAGCTCATTACGACAAATGCTCGGAGAAAAATCCGGATCAGGTGAGAAAATGTAACATTTGCGGGGATAGTTTTGAAAACAACGAAATGCTGAAGGAACATCGAGGGAAACACGTCGACGAGGGAATATTAACGGAGGAGGATCTTCGAGAGATCGAACCGGGAATCGACGATAGAAAAGAATCGGGAAAAGTACCGAGAAAGCGTCGTACCGACATAGTCGGTCTCGAGTGCACGGAGTGCAACAAGCGCTACACATCGCGAAAGGGTTTGCTACGACACATACAGGTTCACGAGGGTAAAAAATATCTTTGCGACATATGTCCGAAGAAATTTTATCGACGGGAACATCTAAAGATTCACGTTGCCAAACACAATATGATAAAACCGTACAAATGCACGCGTTGCACTAAACGTTTCATAAAGGAGGATCAGCTAGCGAATCATTTGTCGAAACACGATCGTACCTTCAAGAAAACAAAGGAAACCGATAGTTCGAAAAGATTTTTATGCGAAATATGTTCGAAGAGTTTCACGCAATCGACGACACTGATAGCGCATCTGAGAGCTCACAATGGTATAAAACCTTACGTTTGCGAGGTTTGCGCGCGACCTTTCACGACAAACGCTTATCTAAAGATGCACATGCGAACGCACACGCAGGAGAGACCTTACAGTTGTCAGTATTGTTCGAGAGCTTTCGCTCGCGCCGATACGCTTGCCAATCATTTGACATCGCACACCGGTGAGGCAAAGTATCATTGCAAGTATTGTCCGAAAAATTTTCGACGATTGAAATCGTTGAAGGAACACGTTTTCATTCACACGGGACAGAGACCGTACGCGTGTCCAACGTGCGATCGTCGTTTCAACAACAACGGTAGTCGTTACGCTCACAGCAAGCGATGCAAGCAAAATTTGTTGCACAATCAAAATCGCAATCAAACAACAATGCCAAATACGATTGTACAGAACGTAACGGTGCCGCAACCCATTAGGATACATCAGATAACCGGTGATCACGGGACAACGCAGATGCAAGTCGTTAAATCTCAGAGtataaaaacaataacaatcgCAAGACCGAGCGATCAATTGACCGCTCATCAAGTGATGCAGCATCAAGAAATACTCATGCCGCTTATTTTACCGCTCACCGTAACGCTTACCGACGTCGACGAGGAAGTCATACTACCCGAGGGTACCAAGATATTTACTACCGCTTAA
- Protein Sequence
- MDAVQIDTAEDAQNDEAIDTTVPEVCRVCLLGNLLMRDLFVENEVVSLSTKAMSFASVKMLPGDGLPGQVCCECADKLDNAYEFKLQVEQADNVLRQRYDSLNIKEELFFNEVEVHLDEGERSEDPHTLEVDAHYQATVDSLTAEDAEDDKPTLLKDHLALLRVEKLSEEQCAVVTDQKESEEMVEQSNVAAILESNDDHAEYLHDENPEAMAEVYRQSVKAEGINDTEGITIEEHNYIMQQGYTLTRNEEELAQDSADSVAHESAEYLTLMDDDPNEVETLTEPKIEESHREEEPSEKLEISPSETRRSKRKLIKRARNSDEENYFENLNLSSRLKKTQSEKPEKVFLCYLCDKQFISKDILKEHMHSHEEVRRALSLKKSEKLEKRHSTSTKSSGAVASVGQSGSSSSSGKRANKCPYCGKEYLYVISFNKHLKQHERNKDSSKDASMSMEESFDGDENSSDFAGYEDTPMSDTRSRIEQENEEDAIDDSSPERKKRRRKSVRSEAIYYCDKCTEKFSTKRALGEHTIIHDTSLKCNTCDEEFDALEKLRRHRSQHVVEGVLTEQDLVDNVYEREFESEVPDEGVNVMYEDTEMSETHLVTGSQDQQREEETEAILESGVENEWHLDVPEAESDNREINESRSSEIELKCPNCPMSYSHKKSLARHMESHEGTIYSCKICKQKFTRKDYLQRHVEQHARTKSFKCTECGKIFGNELTLRNHLIATNHKTIVHGQEYDPNKRLKRVAAKAAQKIIDKIKTEDGLEEYGEEEMEDTAVEGRNSKGNGRWARNEEKVHPTASSRKAQHRNRRRSDFECETCGRKCSSKASLTKHMEQQHVKGEKSDIVPKIEKIGKNNISEVCERSTGVAKDDRIDEDDDEEEDNNSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLKEHRGKHVDEGILTEEDLREIEPGIDDRKESGKVPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEDQLANHLSKHDRTFKKTKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLHNQNRNQTTMPNTIVQNVTVPQPIRIHQITGDHGTTQMQVVKSQSIKTITIARPSDQLTAHQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841280;
- 90% Identity
- iTF_00398271;
- 80% Identity
- -