Lnyc006671.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- -
- Assembly
- GCA_963978505.1
- Location
- OZ021682.1:11353355-11358229[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.045 3.2 8.3 2.5 1 23 352 374 352 374 0.95 2 19 0.026 1.9 9.0 0.6 2 23 421 442 420 442 0.95 3 19 0.00035 0.025 14.9 0.9 1 23 515 537 515 537 0.97 4 19 0.00081 0.058 13.8 1.4 1 23 541 563 541 563 0.97 5 19 9e-06 0.00065 19.9 1.4 2 23 656 677 655 677 0.97 6 19 6.6e-05 0.0047 17.2 1.3 1 23 682 705 682 705 0.91 7 19 0.00035 0.025 14.9 0.2 1 21 711 731 711 735 0.92 8 19 2.3e-05 0.0017 18.7 2.5 1 23 819 842 819 842 0.95 9 19 5.4e-05 0.0039 17.5 3.9 1 23 903 925 903 925 0.97 10 19 0.0003 0.022 15.1 0.7 1 20 930 949 930 951 0.94 11 19 0.00078 0.056 13.8 0.8 2 23 962 983 962 983 0.98 12 19 1.4e-05 0.001 19.3 0.7 2 23 1022 1043 1021 1043 0.97 13 19 2.8e-05 0.002 18.4 1.6 1 23 1048 1070 1048 1070 0.95 14 19 0.00013 0.0096 16.3 2.0 1 23 1076 1098 1076 1098 0.98 15 19 5e-06 0.00036 20.7 0.4 1 23 1114 1136 1114 1136 0.95 16 19 1.6e-06 0.00011 22.3 0.3 1 23 1142 1164 1142 1164 0.99 17 19 3e-05 0.0022 18.3 0.3 1 23 1170 1192 1170 1192 0.98 18 19 0.00016 0.012 16.0 4.1 1 23 1198 1220 1198 1220 0.96 19 19 0.012 0.83 10.2 0.4 1 20 1226 1245 1226 1247 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTCGAGATTGATGAGGCGGACGATGCTCAGAACGACGAGGCCATTGAGACGACAGTGCCGGAGGTATGCCGCGTTTGTTTACTCGGCAATTTGTTGATGAGGGAtcttttcgtcgagaacgACGTTGTTTCCCTCTCGACGAAGGCAATGAGCTTCGCCAGCGTAAAGATGTTACCCGACGATGGCCTGCCTGGACAGGTATGCTGTGAATGTGCAGACAAATTGGATAGTGCGTACGAGTTTAAGTTGCAAGTTGAGCAGGCCGACAACGTACTGAGGCAGAGATACGACTCTCTGAATATTAAGGAAGAATTGTTCTTCAACGAAGTGGAAGTACATCTGGATGATGGGGAACAAAGCCAGGATGTACATACTCTCGAGGTTGATGCCCACTACCAAGCTACAGTGGATAGCTTGACCGCAGGGGATGCAGACAATGATAAACCTTCTCTTCTCAAAGATCACTTGGCTCTGCTGCAAGTTCAGAAACTTGCGGAAGAGCAGTGCTCCGCTGAAAATGcCATGGAGCAAAAGGAGGCCGAGGAAATGGTTGAAGAATCGAACGTGGCAGCTATTCTCGAGTCAACCGAAGATCACGCTGAGTATCTTCACGACGGCGAGGAGAGTTCCGAGGAGATGGCGGAGGTTTACGGACAATCCGTGAAGGCTGAGGGCATGAACGACGCGGAGGGTATAACAATCGAGGAGCACAATTACATAATGCAACAAGGTTACAGGTTgacgagaaacgaggaggAACTGGCTCCGGACAGCGTCGATTCGGGCGCTCACGAGTCCGCTGAGTACCTGACGCTCATGGATGAAGATCCGAACGAGACCGAGGAGTTAAACGACGTGAAGCTCGAGGAGGATCGACAGGCGCCAGTGACCGAGGATAAACACGAAAGCACACACGGAGAGACTCGTCggagcaaaagaaaattgacgaaacgCTGCAGaaccgaggacgaggagaatTACTTTGAAAATCTAAACCTTAGCagtagattgaaaaaaacacaGGCCGAGAAACCGGAGAAGGTATTCCTGTGTTACTTGTGCGACAAGCAATTTATGTCGAAGGACATACTGAAGGAACACATGCACTCGCACGAGGAGGTGAGACGAACTCTGTCACTGAAGAAGAGCGAAAAAGTCGACAAAGGTCTCGCGAGTCCGACGAAACTGGGAGCGGCCGTCGCGTCGGCGGGTCCTTCGACTTCCGCCTCCTCGTCCGGCAAGCGACCTAGCAAATGTCCGTACTGCGGCAAAGAATATCTGTACGTAATATCTTTCAACAAACATCTGAAGCAGCACGAGAGAAACAAAGATTCCTCTAAGGACACCGCCGCATCCGTGTCGCAGGATGATACGCTGAACGGTGATGAGGATTCGTGCGATTTTGCCGGCTATGACGACACACGGATCTCCGAGACAAGCAGCAGGGTCGAGCACGCCGACGACGATATCAACGACGAATCGAGtcctgagagaaaaaaacgtagacGAAAAATCGGACGCTCCGAGACGGTTTACTCTTGCGACAAGTGCAACGAGAAATTCACCACGAAACGAGCGCTCGGCGAGCATACGAACGAGCACAATACGACCTTTAAGTGCAGCACTTGCAACCAAGATTTCGGTGATCTCGACAAACTTCGTCGACATCGTTCGGAACACGTCGTCGACGGAGTTCTGTCGGAGCACGATCTCGAGGACAGAATTTACGAGAGGGATTTCAACGCCGAAGCTCCCGACGATAGTGGAAATGTTATGTTTGATGGCACAGAAATTGCCGAGAGCCATCTGGAAACAGGAAGTCAGGAGCAAGTGGGCGAAGTCGTGGACCAGTCACTTCTGgacggcaacgacgacgacgaatggCATCTGGGGGTGTCCGAGGGCGAGAAGGAATGCGATCAAGCTGAAACGGCGCAGGTGACCGAGTCCGAGCTCAAGTGTCCAAACTGTCCGATGAGCTATTCGCACAAAAAATCTCTTGCGCGACACATGGAGAGTCATGAGGGTACGGTATACGCGTGCAAAAtttgcaaacaaaaattcatccggAAGGATTATCTTCAGCGTCACGAGGAGCAGCAGCACGCAAGATCAAAGTCTTTCAAGTGCACGGAGTGCGGCAAGATCTTCGGAAACGAGCTGACACTGCGCAATCATTTGATAGCGACGAGCCACAAGACGATAGTTCACGGCCAGGAGTACGATCCAAACAAGCGACTAAAGAGGGTGGCGGCGAAAGCAGCGCAGAAGATAATCGACAAGATAAAAACGGAGGACGGTCTGGAGGAGTACggggacgaggacgaggaggctATCGACAGTAAAAACTTTAAGGGTAACGTGCGGTGggcgagaaacgacgagaaagtTCATCCCACGGCTTCGTCGAGAAAGGCTCAACACCGGAATCGCCGAAGATCCGATTTTGAGTGCGAGACTTGCGGCCGTAAGTGCAGCTCGAAAGCGTCGTTGACGAAGCACATGGAGCAGCAGCACGTTAATATCGACAAATCCGATCTGACGCCAAAGGTGGAAAAAGGAACGAGGAATAACATTTCGGAGGGATACGAGAGGGCGTCGGGAATCGCTCACGGGGACAAAacggaggaggacgacgacgacgacgatgataacAATTCGGACTTCGAGAGCGGTCTCGACTGGCCGATGGACAATCACGAGTGTCCTACGTGCAAGAAGAAGTACAGCACCAAAAAATCCCTCCTTCGTCACCAATTGCTTCACGAGGAGCCGAACTTCGAGTGCGACATCTGCAACGTTAAATTCTATCGGAAGGACAAGCTGAAGGCTCACTACGACAAATGCTCGGAGAAGAATCCCGATCAAGTGAGAAAATGTAATATATGCGGAGACAGCTTCGAGAACAACGAGATGCTCAAGGAGCATCGTTCCAAACACGTAGATGAGGGAATACTCACCGAGGAGGATCTTCGCGAAATCGAGCCAGGCCTCGACGACAGAAACGAATCGGGTAAGGTAGCGAGAAAGCGTCGGACCGACATAGTCGGTCTCGAGTGCACGGAGTGCAACAAGCGTTACACTTCGCGCAAGGGACTCCTCAGGCACATACAGGTTCACGAGGGCAAGAAATACCTTTGCGATATATgtccgaagaaattttatcgtcgcgaaCACCTCAAGATTCACGTTGCGAAACATAACATGATAAAACCATACAAGTGCACCCGCTGCACCAAGAGATTCATAAAGGAGGATCAACTGGCGAATCATCTCTCGAAGCACGATCGTACATTTAAGAAGACCAAGGAGACGGACAGCTCGAAGAGATTCCTGTGCGAGATATGCTCAAAGAGCTTCACGCAATCGACGACCCTGATAGCTCATCTGAGGGCTCACAACGGCATCAAACCGTACGTTTGCGAGGTTTGCGCCAGGCCCTTCACGACGAACGCTTATCTGAAGATGCACATGAGGACTCACACGCAGGAACGACCCTACAGCTGCCAGTACTGCTCGAGGGCCTTCGCACGAGCCGACACCCTCGCCAATCACTTGACCTCGCATACCGGCGAGGCTAAGTATCACTGCAAGTACTGTCCGAAGAACTTCCGACGCCTCAAGTCCCTGAAGGAGCACGTCTTCATTCACACGGGACAGAGGCCTTACGCCTGTCCGACGTGCGATCGTCGTTTTAACAACAACGGCAGTCGTTACGCGCACAGCAAGAGGTGCAAGCAGAATATAATGCAGAATCAAAATCGCCCTCAGAACCAAATGGCGAATACTATTGTACAGAGCGCACCGCAACCAATCAGAATACATCAGATCACGGACGATCATGTGACGACCCAGATGCAAGTCGTTAAATCGCAGAGCATAAAAACTATAACGATCGCCAGGCCGACCGATCAGATGACCGCTCATCAAGTTATGCAGCATCAGGAGATACTTATGCCGCTCATTCTACCCCTTACTGTCACGCTCACTGACGTTGACGAGGAAGTCATTCTGCCCGAGGGCACCAAGATATTCACCACAGCTTAA
- Protein Sequence
- MDAVEIDEADDAQNDEAIETTVPEVCRVCLLGNLLMRDLFVENDVVSLSTKAMSFASVKMLPDDGLPGQVCCECADKLDSAYEFKLQVEQADNVLRQRYDSLNIKEELFFNEVEVHLDDGEQSQDVHTLEVDAHYQATVDSLTAGDADNDKPSLLKDHLALLQVQKLAEEQCSAENAMEQKEAEEMVEESNVAAILESTEDHAEYLHDGEESSEEMAEVYGQSVKAEGMNDAEGITIEEHNYIMQQGYRLTRNEEELAPDSVDSGAHESAEYLTLMDEDPNETEELNDVKLEEDRQAPVTEDKHESTHGETRRSKRKLTKRCRTEDEENYFENLNLSSRLKKTQAEKPEKVFLCYLCDKQFMSKDILKEHMHSHEEVRRTLSLKKSEKVDKGLASPTKLGAAVASAGPSTSASSSGKRPSKCPYCGKEYLYVISFNKHLKQHERNKDSSKDTAASVSQDDTLNGDEDSCDFAGYDDTRISETSSRVEHADDDINDESSPERKKRRRKIGRSETVYSCDKCNEKFTTKRALGEHTNEHNTTFKCSTCNQDFGDLDKLRRHRSEHVVDGVLSEHDLEDRIYERDFNAEAPDDSGNVMFDGTEIAESHLETGSQEQVGEVVDQSLLDGNDDDEWHLGVSEGEKECDQAETAQVTESELKCPNCPMSYSHKKSLARHMESHEGTVYACKICKQKFIRKDYLQRHEEQQHARSKSFKCTECGKIFGNELTLRNHLIATSHKTIVHGQEYDPNKRLKRVAAKAAQKIIDKIKTEDGLEEYGDEDEEAIDSKNFKGNVRWARNDEKVHPTASSRKAQHRNRRRSDFECETCGRKCSSKASLTKHMEQQHVNIDKSDLTPKVEKGTRNNISEGYERASGIAHGDKTEEDDDDDDDNNSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLKEHRSKHVDEGILTEEDLREIEPGLDDRNESGKVARKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEDQLANHLSKHDRTFKKTKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNIMQNQNRPQNQMANTIVQSAPQPIRIHQITDDHVTTQMQVVKSQSIKTITIARPTDQMTAHQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841280;
- 90% Identity
- iTF_00058876;
- 80% Identity
- -