Scul020539.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenichneumon culpator
Gene Symbol
-
Assembly
GCA_964017025.1
Location
OZ024780.1:3719079-3723769[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.049 4.7 8.3 2.5 1 23 352 374 352 374 0.95
2 19 0.029 2.8 9.0 0.6 2 23 421 442 420 442 0.95
3 19 0.00017 0.016 16.1 1.1 1 23 515 537 515 537 0.95
4 19 0.0018 0.17 12.8 0.7 2 23 542 563 541 563 0.95
5 19 9.9e-06 0.00095 19.9 1.4 2 23 656 677 655 677 0.97
6 19 1.8e-05 0.0017 19.1 2.8 1 23 682 705 682 705 0.92
7 19 0.0031 0.3 12.1 0.4 1 21 711 731 711 735 0.92
8 19 2.5e-05 0.0024 18.7 2.5 1 23 819 842 819 842 0.95
9 19 5.9e-05 0.0057 17.5 3.9 1 23 902 924 902 924 0.97
10 19 0.00033 0.032 15.1 0.7 1 20 929 948 929 950 0.94
11 19 0.002 0.19 12.7 0.5 2 23 961 982 961 982 0.96
12 19 1.5e-05 0.0015 19.3 0.7 2 23 1021 1042 1020 1042 0.97
13 19 3.1e-05 0.003 18.4 1.6 1 23 1047 1069 1047 1069 0.95
14 19 0.00015 0.014 16.3 2.0 1 23 1075 1097 1075 1097 0.98
15 19 5.5e-06 0.00053 20.7 0.4 1 23 1113 1135 1113 1135 0.95
16 19 1.7e-06 0.00017 22.3 0.3 1 23 1141 1163 1141 1163 0.99
17 19 3.3e-05 0.0032 18.3 0.3 1 23 1169 1191 1169 1191 0.98
18 19 0.00018 0.017 16.0 4.1 1 23 1197 1219 1197 1219 0.96
19 19 0.013 1.2 10.2 0.4 1 20 1225 1244 1225 1246 0.89

Sequence Information

Coding Sequence
ATGGACGCCGTCGAGATTGATACGGCCGACGATGCTCAGAACGACGAGGCCATTGAGACGACAGTGCCGGAGGTATGCCGTGTTTGTTTACTCGGCAATTTGTTGATGAGGGATCTTTTCGTCGAGAACGATGTTGTTTCCCTCTCGACGAAGGCTATGAGCTTCGCCAGTGTGAAGatgctACCCGGGGATGGCCTCCCTGGACAGGTGTGCTGTGAATGCGCAGACAAATTGGACAGTGCTTACGAGTTTAAGCTGCAAGTCGAGCAGGCCGATAACGTACTGAGGCAGAGATACGATTCTCTGAATATCAAGGAAGAATTGTTCTTCAACGAAGTGGAAGTCCATCTGGACGATGGAGAACGAAGCCAGGATGTACACACTCTAGAGGTAGATGCCCACTACCAAGCTACGGTCGATAGCTTGACCGCCGGGCACGTAGACGATGATAAACCTTCGCTTCTCAAGGACCACTTGGCTCTGCTGCAAGTCCAAAAACTCGCGGAACAGCAGTGCTCCACCGAAGCTGCGATGGAGCAAAAAGAGGCCGAAGAATTGGTCGAGGAATCGAACGTGGCCGCCATTCTCGAGTCGACCGAAGATCACACGGAGTATCTTCACGACGGCGAGGAGAGTTCCGAGGAGATGGCGGAGGTTTACAGACAATCGGTGAAGGCCGAGGGTATGAACGACTCCGAGGGGATAACGATCGAGGAGCACAATTATATAATGCAACAGGGTTACACGTTGACGAGAAACGAGGAGGAGCTCGCCCAGGACAGCGTCGATTCCGGTGCTCACGAGTCCGCCGAGTACCTGACGCTCATGGACGAAGATCCGAACGAGACCGGGGCGTTGAACAATGTGAAGGTCGAGGAGGATCGACAAGCGCCAGTGACGGCAGACAAACACGAGAGCACGCACGGCGAGACTCGTCGgagcaaaagaaaattgacgaAACGCTGCCGAACCTCGGACGAGGAGAATTACTTCGAGAATCTGAATCTCAGCAGCAGGTTGAAAAAGACGCAGTCCGAGAAACCGGAAAAGGTATTTCTGTGTTACCTGTGTGACAAGCAATTTATGTCGAAGGACATACTGAAGGAGCACATGCACTCGCACGAAGAGGTGAGGCGAACTTTGTCGCTGAAGAAGAGCGAAAAGGTCGATAAGCGTCTCGCGAGTCCAACGAAACCGGGCGCGGCTACCGCGTCGGCGGGTCCTTCaacttcctcctcctcgtccggCAAGCGCATCAGCAAATGTCCGTACTGCGGCAAAGAATATCTATACGTAATATCTTTCAACAAACATCTGAAACAGCACGAGAGAAACAAAGATTCGTCGAAGGACGCTGCCGCTTCCGTGTCGCAGGATGATACTCTGAACGGTGACGAGGATTCGTCGGATTTTGCCGGCTACGACGACACTCGGACCTCCGAGTCGAGCAGCAGGGTGGAGCACGCCGACGACGATATCAACGACGAATCGAGtcccgagagaaaaaaacgtagAAGAAAAACCGGACGTTCCGAGACGGTTTACTCTTGCGACAAgtgcaacaaaaaattcaccaCGAAACGAGCGCTCGGCGAGCACACGATCGAGCACAATACGAGCTTGAAGTGTAGCACTTGCGACCAAGATTTCGGCGATCTCGACAAACTTCGTCGGCATCGTTCGGAGCACGTCGTGGAGGGAGTTCTGTCGGAGCAAGATCTCGAGGACAAAGTTTACGAGCGGGAGTTTAACGCCGAAGCGCCGGACGACGGTGGAAACGTTATGTTCGAGGGCACGGAAATTACCGAGAGCCAActggaaaccggaagtcagGAACAAGTGGGCGAAGGCGTGAACGAATCACTCCTggacgacaacgacgatgaCGAGTGGCATCTGGGGGTGTCCGAGAGCGAGAAGGAGTCCGAGCAAGTTCAAGCGGCCCAAGTGACCGAGACCGAACTGAAATGTCCCAACTGTCCTATGAGCTATTCGCACAAAAAATCTCTCGCACGACACATGGAGAGTCACGAGGGCACGATATACACGTGCAAAatttgcaaacaaaaattcaccCGAAAGGATTATCTTCAGCGTCACGAGGAGCAGCAGCACGCGAGATCGAAGTCGTTCAAGTGCACGGAGTGCAGCAAAATCTTTGGCAACGAGCTGACGCTGCGCAACCATTTGATAGCGACGAGCCACAAGACGATCGTTCACGGCCAGGAGTACGATCCGAACAAGAGACTGAAGCGCGTGGCGGCCAAAGCCGCGCAGAAGATAATCGACAAGATAAAAACTGAGGACGGTCTGGAGGAATACggggacgaggacgaggaggccGTCGACAGTAAAAACTTCAAGGGTAACGTGCGATGGGCGAGAAACGACGAGAAAGTCCATCCCACCGCTTCGTCGAGAAAGGCTCAGCACCGGAATCGCCGGAGATCCGACTTCGAGTGCGAGACTTGCGGTCGTAAGTGCAGCTCTAAAGCGTCGTTGACGAAGCACATGGAGCAGCAGCACGTTAAGATCGATAAGTCCGATCTGACGTCGAAGGTGGAGAAGGGAACGAGAAACAATATTTCGGAGGGATACGAGAGAGCGTCGGGTATCGCGCAGGAGGACAGGacggaggacgacgacgacgacgacgacgacaactcGGACTTTGAGAGCGGTCTCGACTGGCCGATGGACAATCACGAGTGTCCTACGTGCAAGAAGAAATACagcacaaaaaaatctctcctTCGCCACCAATTGCTCCACGAGGAGCCGAACTTCGAGTGCGACATCTGCAACGTTAAATTCTACCGTAAGGACAAGCTGAAGGCTCACTACGATAAATGTTCGGAGAAAAATCCCGATCAGGTGAGAAAATGTAATATATGCGGGGACAGCTTCGAGAACAACGAGATGCTCAAGGAGCACCGGGGCAAACACGTCGACGAGGGAATACTCACCGAGGAGGATCTTCGTGAGATCGAGCCGGGTCTCGACGACAGAAACGAATCGGGCAAAGTAGCGAGAAAGCGTCGAACCGACATAGTCGGTCTCGAGTGCACGGAGTGCAACAAGCGTTATACCTCGCGCAAGGGACTCCTCAGGCACATACAGGTTCACGAGGGCAAGAAATACCTGTGCGACATATGCCCGAAGAAATTTTATCGACGCGAGCACCTCAAGATTCATGTCGCTAAGCACAACATGATAAAGCCATACAAATGCACCCGCTGCACCAAGAGATTCATAAAGGAGGATCAACTGGCGAATCATCTCTCGAAGCACGATCGTACCTTCAAGAAGACCAAGGAGACCGACAGCTCGAAGAGATTCCTGTGCGAGATATGCTCGAAGAGCTTCACGCAATCAACGACCCTCATAGCTCATCTCAGAGCTCACAACGGCATAAAACCGTACGTTTGCGAGGTCTGCGCCAGGCCGTTCACGACGAACGCTTATCTCAAGATGCACATGAGGACTCACACGCAGGAGCGACCCTACAGCTGCCAGTACTGCTCGAGGGCCTTCGCCCGAGCCGACACCCTCGCCAATCACTTGACCTCGCACACCGGCGAGGCCAAGTATCACTGCAAATACTGTCCGAAAAACTTCCGACGCCTGAAATCCCTGAAGGAGCACGTGTTCATTCACACGGGACAGAGGCCCTACGCGTGTCCGACCTGCGATCGACGTTTCAACAACAACGGCAGTCGTTACGCTCACAGCAAGAGGTGCAAGCAGAATATACTGCAAAATCAAAATCGCAATCAAAACCAAATGGCGAATACGATCGTACAGAGCGCACCTCAACCAATCAGGATACATCAGATCACCGACGATCACGTGACGACCCAGATGCAAGTCGTCAAATCGCAGAGCATAAAAACTATAACGATCGCCAGGCCGACCGATCAGATGACCGCTCATCAAGTGATGCAGCATCAGGAAATACTTATGCCGCTCATTCTACCCCTCACCGTTACGCTCACCGACGTCGACGAGGAAGTTATCCTGCCCGAGGGCACCAAGATATTTACCACAGCTTAA
Protein Sequence
MDAVEIDTADDAQNDEAIETTVPEVCRVCLLGNLLMRDLFVENDVVSLSTKAMSFASVKMLPGDGLPGQVCCECADKLDSAYEFKLQVEQADNVLRQRYDSLNIKEELFFNEVEVHLDDGERSQDVHTLEVDAHYQATVDSLTAGHVDDDKPSLLKDHLALLQVQKLAEQQCSTEAAMEQKEAEELVEESNVAAILESTEDHTEYLHDGEESSEEMAEVYRQSVKAEGMNDSEGITIEEHNYIMQQGYTLTRNEEELAQDSVDSGAHESAEYLTLMDEDPNETGALNNVKVEEDRQAPVTADKHESTHGETRRSKRKLTKRCRTSDEENYFENLNLSSRLKKTQSEKPEKVFLCYLCDKQFMSKDILKEHMHSHEEVRRTLSLKKSEKVDKRLASPTKPGAATASAGPSTSSSSSGKRISKCPYCGKEYLYVISFNKHLKQHERNKDSSKDAAASVSQDDTLNGDEDSSDFAGYDDTRTSESSSRVEHADDDINDESSPERKKRRRKTGRSETVYSCDKCNKKFTTKRALGEHTIEHNTSLKCSTCDQDFGDLDKLRRHRSEHVVEGVLSEQDLEDKVYEREFNAEAPDDGGNVMFEGTEITESQLETGSQEQVGEGVNESLLDDNDDDEWHLGVSESEKESEQVQAAQVTETELKCPNCPMSYSHKKSLARHMESHEGTIYTCKICKQKFTRKDYLQRHEEQQHARSKSFKCTECSKIFGNELTLRNHLIATSHKTIVHGQEYDPNKRLKRVAAKAAQKIIDKIKTEDGLEEYGDEDEEAVDSKNFKGNVRWARNDEKVHPTASSRKAQHRNRRRSDFECETCGRKCSSKASLTKHMEQQHVKIDKSDLTSKVEKGTRNNISEGYERASGIAQEDRTEDDDDDDDDNSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLKEHRGKHVDEGILTEEDLREIEPGLDDRNESGKVARKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEDQLANHLSKHDRTFKKTKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNILQNQNRNQNQMANTIVQSAPQPIRIHQITDDHVTTQMQVVKSQSIKTITIARPTDQMTAHQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00841280;
90% Identity
iTF_00058876;
80% Identity
-