Afus010750.1
Basic Information
- Insect
- Amblyjoppa fuscipennis
- Gene Symbol
- -
- Assembly
- GCA_963575735.1
- Location
- OY754491.1:17743986-17748660[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.049 4.5 8.3 2.5 1 23 352 374 352 374 0.95 2 19 0.029 2.6 9.0 0.6 2 23 420 441 419 441 0.95 3 19 0.00065 0.059 14.2 0.6 1 23 514 536 514 536 0.95 4 19 0.0005 0.046 14.6 1.1 1 23 540 562 540 562 0.97 5 19 1e-05 0.00091 19.9 1.4 2 23 655 676 654 676 0.97 6 19 2.6e-05 0.0024 18.6 2.7 1 23 681 704 681 704 0.92 7 19 0.00038 0.035 14.9 0.2 1 21 710 730 710 734 0.92 8 19 1.9e-05 0.0018 19.0 1.7 1 23 818 841 818 841 0.94 9 19 5.9e-05 0.0054 17.5 3.9 1 23 901 923 901 923 0.97 10 19 0.00034 0.031 15.1 0.7 1 20 928 947 928 949 0.94 11 19 0.002 0.18 12.7 0.5 2 23 960 981 960 981 0.96 12 19 1.5e-05 0.0014 19.3 0.7 2 23 1020 1041 1019 1041 0.97 13 19 3.1e-05 0.0028 18.4 1.6 1 23 1046 1068 1046 1068 0.95 14 19 0.00015 0.013 16.3 2.0 1 23 1074 1096 1074 1096 0.98 15 19 5.5e-06 0.0005 20.7 0.4 1 23 1112 1134 1112 1134 0.95 16 19 1.8e-06 0.00016 22.3 0.3 1 23 1140 1162 1140 1162 0.99 17 19 3.3e-05 0.003 18.3 0.3 1 23 1168 1190 1168 1190 0.98 18 19 0.00018 0.016 16.0 4.1 1 23 1196 1218 1196 1218 0.96 19 19 0.013 1.2 10.2 0.4 1 20 1224 1243 1224 1245 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAGATTGATACGGCGGACGATGCTCAGAACGACGAGGCCATTGAGACGACAGTGCCGGAGGTATGCCGCGTTTGTTTACTCGGCAATTTGATGATGAGGGATCTTTTCGTCGAGAACGATGTTGTTTCCCTCTCGACGAAGGCGATGAGCTTCGCCAGTGTGAAGATGCTACCCGGAGATGGTCTGCCTGGACAGGTGTGCTGCGATTGCGCTGACAAATTGGACAGTGCTTATGAGTTTAAGCTGCAAGTCGAACAGGCGGATAACGTACTGAGGCAGAGATACGATTCTCTGAATATCAAGGAAGAATTGTTCTTCAACGAAGTGGAAGTCCATCTGGACGATGGAGAACGAAGCCAGGATGTACACACTCTGGAGGTGGATGCCCACTACCAAGCTACTGTGGATAGCTTGACCGCCGGGCACGTAGACGATGATAAACCTTCGCTTCTCAAGGACCACTTGGCTCTGCTGCAAGTCCAGAAACTTGCGGAAGAGCAGTGCTCCGCCGAAGCTGCCATGGAGCAAAAAGAGGCCGAGGAAATGGTCGAGGAATCGAACGTGGCCGCCATTCTCGAGTCGACCGAAGACCACGCTGAGTATCTTCACGACGGTGAGGAGAGTTCCGAGGAGATGGCGGAGGTTTACAGACAATCGGTGAAGGCCGAGGGTATGAACGACACCGAGGGTATAACGATCGAGGAGCACAATTACATAATGCAACAGGGTTACACTTTGACGAGAAACGAGGAGGATCTGGCTCAGGACAGCGTCGATTCCGGCGCTCACGAGTCCGCCGAGTACCTGACGCTCATGGACGAAGATCCGAACGAGCCTGAGGCGTTGAACGACGTGAAGATCGAGGAGGATCGACGCGCGCCAGCGACGGAAGATAAACCAGAGAGCGCGCACGGCGAGACTCGTCGGAGCAAAAGGAAACTGACGAAGCGCTGCCGAACCTCGGACGAGGAGAATTACTTCGAGAATCTGAATCTCAGCAGCAGATTGAAAAAGTCACAGTCCGAGAAACCGGAAAAGGTGTTCCTGTGTTATCTGTGCGACAAGCAGTTTATGTCGAAGGATATACTGAAGGAGCACATGCACTCGCACGAGGAGGTGAGACGAACATTGTCGCTGAAGAAGAGCGAAAAAGTCGAGAAGCGCCTCGCGAGTCCGACGAAAACGAGCGCGGCCGTCGCGTCGGCGGGTCCTTCGACTTCCTCCTCGTCCGGCAAGCGCCCCAGCAAATGTCCGTACTGCGGCAAAGAATACCTCTACGTGATATCTTTCAACAAACATCTCAAGCAGCACGAGAGAAACAAGGATTCGTCGAAGGACGCTCCAGCTTCTGTGTCGCAGGACGATACTCTAAACGGTGACGAGGATTCGTCGGATTTCGCTGGCTACGACGACACTCGGACTTCGGAGGCGAGCAGCAGAGTCGAGCAGGCCGACGACGATGTCAACGACGAATCGAgccccgagagagagaaacgcaGAAGAAAAACCGGCCGTTCCGAGACGGTTTACTCCTGCGACAAGTGCAACGAGAAATTCACCACGAAACGAGCGCTCGGCGAGCACACGATCGAGCACAACACGAGCTTCAAGTGCAGCACTTGCGACCAAGATTTCGGCGATCTCGACAAACTTCGTCGGCACCGTTCGGAGCACGTCGTGGAGGGAGTTCTCACGGAGCAAGATCTCGAGGACAAAGTTTACGAGAGGGAGTTCAACGCCGAAGCGCCCGACGACGCTGGAAACGTTATGTTCGAAGGCGCGGAAATTACCGAGAGCCATCTGGAGACCGGAAGTCAGGAGCAAGTGGTCGAGGGCGTAGACGGAGCACTCCTggacgagaacgacgacgacgagtggCATCTCGGGGTGTCCGAGAGCGAGAAGGAGTGCGATCAGGCTCAGGCGGCGCAGGGAACCGAGAGCGAGCTCAAGTGTCCCAACTGTCCGATGAGCTACTCGCACAAGAAATCTCTCGCGCGGCACATGGAGAGTCACGAGGGCACGATATACTCTTGCAAAATTTGCAAGCAAAAATTCACGCGAAAGGATTATCTTCAGCGTCACGAGGAGCAGCAGCACGCGAGATCGAAGTCCTTCAAGTGCACGGAGTGCGGCAAGATCTTCGGGAACGAGCTGACGCTGCGAAACCATTTGATAGCGACGAGCCACAAGACGATGGTTCACGGCCAGGAGTACGATCCGAACAAGAGACTGAAGCGCGTGGCGGCGAAGGCGGCGCAGAAGATAATCGACAAGATCAAAACTGAGGACGGCCTTGAGGAGTACGgtgacgaggacgaggaggccgTCGACAGTAAGAACTTCAAGGGTAACGTGCGATGGGCGAGAAACGACGTGAAAGTCCATCCCACGGCTTCATCGAGAAAGGCTCAGCACCGGAATCGCCGGAGATCGGATTTCGAGTGCGAGACTTGCGGTCGCAAGTGCAGCTCGAAGGCGTCGTTGACGAAGCACATGGAGGCGCAGCACGTCAAGATCGACAAGTCCGATCTGACGCCGAAGGTGGAGAAGGGAACGAGAAACATTTCGGAGGGGTACGAGAGAGCGTCGGGCATCGCGCAGGAGGACAGgaccgaggacgacgacgacgacgacgacgataacAATTCGGACTTCGAGAGCGGTCTCGACTGGCCGATGGACAATCACGAGTGTCCCACGTGCAAGAAGAAATACAGCACGAAGAAATCCCTCCTACGCCACCAATTGCTCCACGAGGAGCCGAACTTCGAGTGCGACATCTGCAACGTTAAGTTCTACCGCAAGGACAAGCTGAAGGCTCACTACGACAAATGCTCGGAGAAGAATCCCGATCAGGTGCGGAAATGTAATATATGCGGGGACAGCTTCGAGAACAACGAGATGCTCAAGGAGCACCGGGGCAAACACGTCGACGAGGGAATACTTACCGAGGAGGATCTCCGCGAGATCGAGCCGGGTCTCGAGGACAGAAACGAATCGGGCAAGGTTGCGAGAAAGCGTCGGACCGACATAGTCGGTCTCGAGTGCACGGAGTGCAACAAGCGTTACACATCGCGCAAGGGACTCCTCAGGCACATACAGGTTCACGAGGGCAAGAAGTATCTGTGCGACATATGCCCGAAGAAATTCTATCGACGCGAGCACCTAAAGATTCACGTCGCCAAGCACAACATGATAAAGCCATACAAATGCACCCGCTGCACCAAGAGATTCATAAAGGAGGATCAGCTCGCGAATCATCTCTCGAAGCACGATCGCACCTTCAAGAAGACCAAGGAGACCGACAGCTCCAAGAGATTCCTCTGCGAGATATGCTCGAAGAGCTTCACGCAATCGACGACCCTCATAGCTCATCTCAGAGCCCACAACGGCATAAAACCGTACGTCTGCGAGGTCTGCGCCAGGCCCTTCACGACGAACGCTTATCTGAAGATGCACATGAGGACTCACACGCAGGAGCGACCCTACAGCTGCCAGTACTGCTCGAGGGCCTTCGCGCGAGCCGACACCCTCGCCAATCACCTGACATCGCACACCGGCGAGGCAAAGTATCACTGCAAGTACTGCCCGAAGAACTTCCGACGACTTAAGTCCCTGAAGGAGCACGTCTTCATTCACACGGGACAGAGGCCTTACGCCTGTCCCACATGCGATCGGCGCTTCAACAACAACGGCAGTCGTTACGCTCACAGCAAGAGGTGCAAGCAGAACATAATGCAGAATCAAAATCGCAATCAGAACCAAATGGCGAACACGATCGTGCAGAGCGCACCGCAACCAATCAGGATACATCAGATCACCGACGATCACGTGACGACACAGATGCAAGTCGTCAAATCGCAAAGCATCAAAACTATAACGATTGCCAGGCCGACCGATCAGATGACCGCTCATCAAGTTATGCAGCATCAGGAAATACTTATGCCGCTCATTCTACCCCTCACCGTCACGCTCaccgacgtcgacgaggaagTCATCCTGCCCGAGGGCACCAAGATATTTACCACAGCTTAA
- Protein Sequence
- MDAVEIDTADDAQNDEAIETTVPEVCRVCLLGNLMMRDLFVENDVVSLSTKAMSFASVKMLPGDGLPGQVCCDCADKLDSAYEFKLQVEQADNVLRQRYDSLNIKEELFFNEVEVHLDDGERSQDVHTLEVDAHYQATVDSLTAGHVDDDKPSLLKDHLALLQVQKLAEEQCSAEAAMEQKEAEEMVEESNVAAILESTEDHAEYLHDGEESSEEMAEVYRQSVKAEGMNDTEGITIEEHNYIMQQGYTLTRNEEDLAQDSVDSGAHESAEYLTLMDEDPNEPEALNDVKIEEDRRAPATEDKPESAHGETRRSKRKLTKRCRTSDEENYFENLNLSSRLKKSQSEKPEKVFLCYLCDKQFMSKDILKEHMHSHEEVRRTLSLKKSEKVEKRLASPTKTSAAVASAGPSTSSSSGKRPSKCPYCGKEYLYVISFNKHLKQHERNKDSSKDAPASVSQDDTLNGDEDSSDFAGYDDTRTSEASSRVEQADDDVNDESSPEREKRRRKTGRSETVYSCDKCNEKFTTKRALGEHTIEHNTSFKCSTCDQDFGDLDKLRRHRSEHVVEGVLTEQDLEDKVYEREFNAEAPDDAGNVMFEGAEITESHLETGSQEQVVEGVDGALLDENDDDEWHLGVSESEKECDQAQAAQGTESELKCPNCPMSYSHKKSLARHMESHEGTIYSCKICKQKFTRKDYLQRHEEQQHARSKSFKCTECGKIFGNELTLRNHLIATSHKTMVHGQEYDPNKRLKRVAAKAAQKIIDKIKTEDGLEEYGDEDEEAVDSKNFKGNVRWARNDVKVHPTASSRKAQHRNRRRSDFECETCGRKCSSKASLTKHMEAQHVKIDKSDLTPKVEKGTRNISEGYERASGIAQEDRTEDDDDDDDDNNSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLKEHRGKHVDEGILTEEDLREIEPGLEDRNESGKVARKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEDQLANHLSKHDRTFKKTKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNIMQNQNRNQNQMANTIVQSAPQPIRIHQITDDHVTTQMQVVKSQSIKTITIARPTDQMTAHQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841280;
- 90% Identity
- iTF_00058876;
- 80% Identity
- -