Hamb023300.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- baz-2
- Assembly
- GCA_949774945.1
- Location
- OX458991.1:4288858-4315959[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-12 6.4e-09 35.9 0.0 3 75 633 708 631 710 0.89
Sequence Information
- Coding Sequence
- ATGGACAAGGAAGGGGGGGATGGCGGCGACGCGGCGGGCAAGCAGCCCCCCGACGGCCTGCTCGATGCCGCTAACCTATTTGGTGCATACTGGGGTCGCGATGGTGGCGGCGGTGGGAGCGCGGCAGCGCAAGCGCAGGCGCAAGCACAAGCAGCCCTATTCGGCTTCGGGTCGCGCTACCCGCCCCCGACCACGCTCGGAGTGGCAGCTAATCAGGCAGCCTCCCTGGGGCTACATCCAGCTGCCAGTGCAGCCTGGTGGTCGATGGCATCACACCTAGCAGCTCAGGACTACCTGGCCAGGCTGCAAGCCTCAGGGTTAAACTTCCCACCGCTGGCCGACCCTTACGCCGCGCTCTCGGCCCTGTCCGGCGGCGGTGGGGGGTTGAAGCAGCCTCAGAAACCTGGGAAATTGTCTAGTCGAAATGAGAGGTCAGGGAGAAGCAGTACATCATCAAGCGCCTCCACAAAAGACAAGAGTCCATCCACGAGCAGCGCAAATTCGCAGAACATGAGTGAGTGGGGGTCTTCATATGGTTTGCCGAAGACTTCGTCTCCGTCCGCGATGCACCACTCTGCGTCTCTGTCAAGCCTGGCTTCCCTCAACAGTCTGGTGTCTGCTCCTCATCAGAGCAAGTCCAGTAGCAAGCCCTCGGCTACCCCACAGCCTTCCAAAAAACCCTCATCATCGTCGTCATCCAGCTCCAAAGGCAAGGAGCGCGAGCTAGCGCTGCTGCGCGGCGACCTGATGCTTGCGCAGGCGGCGGCGCACGGCGCGTACCACGCCGCCGTGGCTGCGGCTGCTAAGGGCAAGAACATGTCACCGCTATACCCGTTTGGGATGCCAGGGTCTGATAAGGATGGACGGCATGGCGGCATAGACTCCCTTACTGGCCTACCGCATACCATACTCAGTGATCCATCATCAGTGCTGGGCGGTGTCAGATTGCCTCCGGATACTGAAATCATCAAGTATACCTCCTCGTTAGCCGGGCCCAAGTCAGGTGCGGGCACGACGACCCGCGGCCGCAAGAAGACGATCTCCCTCGACCCGCCGCACGTCAGCGTGCACCCCGCCGACCGGAACGCGCCGCTGCCCAGCAAACGGCCTAAACTTGACGAGTACGGCAACTCCCGGTCGTCGGTTGAGGTGATCCGGCTGCCCAACAAACCGGACAGGCCCGGACACAACTCGATGTCCGGCACGCCCCCACCTAATCTGTCCGATTATGCAGGAATATCCCGAGAACTGCTGCAGACGATAGCTAGTCAGAGCGGCGTGAGTCTGGCCGCGCTGGAGCGTCAGCTGGCTGGCTCCACAGGTGACTATTATGCAGGTCTCAACCTAAGCACTAAGATGGGTGAGGACTCGCCTTTGGACCTGGGTGTTAAGTCTTCAGCAATGGATGACGATGCGCCACTAAACCTTTCACTTAAACCTACACCTGCGAGTTCGCAAGCTTCAGACGCTCTCTCGCGACTGACGTCATTGAGCAGTTCGCTCAACGCGTCTTCCAGCCATGACAGGATATCTCGCCGCAAGCCGGGCGCGAAGCCACGTCGCGTGGCGCCGGAGATGAACCCGGTGCCGGACGCGCCGCGACCCAAGTCCAGCGGCAGCGAGGACAGTGAATCAGTAGCCGGGTGGGCAGGACGCGAGGGCAGACCGCGCAATTTAGGCAGAGGAGTCAGCAAGCCTAAGAAGAATACTGTCGCGTCCTTATTGGCTCAGAGTCGAGCGCTGGGCTTGAGGCCTGCGCTTGCGCATCAGTTGTTGGCTGAGACTGACTTgGAAAAACTAAAAGCCTTGCTAGGCGAGACGGCGAGTACTGACTCGGAGTGTCCGTCGGACAGCTGTCCGTCCGACTCGGACGCGTCCGATACCAGTCGGAGACCTAACGACGCGCAACTTAGATTGCCTTTAGCTCTAGGTTGGAAACGCGTGACTGTGATCAAGGGTCTTTCCCGGAACTGCAGCATCAAAGGCGACGTGACGTATTCCCCGCCCGACCCGCACGCGGGCATCACCATGCGGTCGCTACACGACGTACAGAATttcCTAGACACGAACCCATGTCCTCCGCTGTCGACGGACAATTTTAGCTTCTCTGCGCGCACAGTGCTCGGCGAGTACATCCAGCCGGCCAGCGATGTGGGGGAACCGCTTGTATACAACGAGAGTGAGATTAATAAGAGGCTGGAGGAGGCGCGGCAGCTGGCCGTGGCGGGCGGGCGGCCCACGCCGCCGCCGCTGGACCGGCGCATGGAGCTGGCGCGCCTGCAGCAGGCCGCGCGCGACGCCCGGCGCGACGCCTCGCACCGCTCCAGGGACCAGGCCCGTCTCGAAAGATCAGAGAAAGCTGAACTAGCTAAACGCGAGAAAGAGGCGAGAAGTCAGCAGCTGCTAGAGCATATCAACAAGAATCGCACGCAGTTGACGATCGAGCCCCTCCCTACGGTACCGAAAACCGGTATCGACGAATGGAAAACACCCGAAATAGTGATGGGACCAGCCACTAAGACGAATAAGGAACGCATTATGCCTCCGATCAGTCTCTCGCTCATACCGGTCTCCGGCCCCAAAGACTCACAGAACTCcccaataaaaacaataaaattcgaCCAATCAGGATGGAAAGAGGAAATAGAAGAATACAACGCTTTAGACAAAATGAAAGACTTCGCTGAAAAAGCAGCTTTCGATCTCCCAAAACGAAAAGACAACAAACAATACgatttcacattaataaaatcAGCAGAAAAGCGCTTGAAAGCGCCAGACAAAGAGAACAATCTAGAACGACTAATAGAATCGTACTCAAGAATAACAGAATTCATAAACggctgtgattggtcgaaacTGCAAGAGGATAAAAAAAGCGAAGACCCAAAGTCTATAGAACAGAAGTACTTAGACGCTAAAAACGAATTCATGTCCCAAAATTTAATGTTGATGCCAAAAGATAGTCCAAAATCTGTACTAAAAGATGTCATAGAACTAAGTGAGGACGATGATATACTGACAGATATTatgtcaaagaaaataaataagggGACGTTTAATGTGGGCAAAGACGGGGCCCTGTCTATCTCTGTACACCCCCTAGGCAAGGAGGCGACGTCATCGGTACGTGACACTCACTAA
- Protein Sequence
- MDKEGGDGGDAAGKQPPDGLLDAANLFGAYWGRDGGGGGSAAAQAQAQAQAALFGFGSRYPPPTTLGVAANQAASLGLHPAASAAWWSMASHLAAQDYLARLQASGLNFPPLADPYAALSALSGGGGGLKQPQKPGKLSSRNERSGRSSTSSSASTKDKSPSTSSANSQNMSEWGSSYGLPKTSSPSAMHHSASLSSLASLNSLVSAPHQSKSSSKPSATPQPSKKPSSSSSSSSKGKERELALLRGDLMLAQAAAHGAYHAAVAAAAKGKNMSPLYPFGMPGSDKDGRHGGIDSLTGLPHTILSDPSSVLGGVRLPPDTEIIKYTSSLAGPKSGAGTTTRGRKKTISLDPPHVSVHPADRNAPLPSKRPKLDEYGNSRSSVEVIRLPNKPDRPGHNSMSGTPPPNLSDYAGISRELLQTIASQSGVSLAALERQLAGSTGDYYAGLNLSTKMGEDSPLDLGVKSSAMDDDAPLNLSLKPTPASSQASDALSRLTSLSSSLNASSSHDRISRRKPGAKPRRVAPEMNPVPDAPRPKSSGSEDSESVAGWAGREGRPRNLGRGVSKPKKNTVASLLAQSRALGLRPALAHQLLAETDLEKLKALLGETASTDSECPSDSCPSDSDASDTSRRPNDAQLRLPLALGWKRVTVIKGLSRNCSIKGDVTYSPPDPHAGITMRSLHDVQNFLDTNPCPPLSTDNFSFSARTVLGEYIQPASDVGEPLVYNESEINKRLEEARQLAVAGGRPTPPPLDRRMELARLQQAARDARRDASHRSRDQARLERSEKAELAKREKEARSQQLLEHINKNRTQLTIEPLPTVPKTGIDEWKTPEIVMGPATKTNKERIMPPISLSLIPVSGPKDSQNSPIKTIKFDQSGWKEEIEEYNALDKMKDFAEKAAFDLPKRKDNKQYDFTLIKSAEKRLKAPDKENNLERLIESYSRITEFINGCDWSKLQEDKKSEDPKSIEQKYLDAKNEFMSQNLMLMPKDSPKSVLKDVIELSEDDDILTDIMSKKINKGTFNVGKDGALSISVHPLGKEATSSVRDTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094944;
- 90% Identity
- iTF_01119361; iTF_00111692; iTF_01247010; iTF_01338786; iTF_00042661; iTF_00383685; iTF_00924709; iTF_01093125; iTF_01085264; iTF_01094064; iTF_01094944; iTF_00622854; iTF_01192742; iTF_00907912; iTF_00906180; iTF_01340139; iTF_00123404; iTF_00449133; iTF_00810095; iTF_00038800; iTF_00771953; iTF_00758194; iTF_00037843; iTF_00973811; iTF_00726388; iTF_00364053; iTF_00274455; iTF_00120536; iTF_00147484; iTF_01260128;
- 80% Identity
- -