Pfla039615.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- baz-2
- Assembly
- GCA_949987655.1
- Location
- OX465198.1:7021265-7068237[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-12 9.5e-09 36.2 0.0 3 75 630 705 628 707 0.89
Sequence Information
- Coding Sequence
- ATGGACAAGGAAGGCGGGGATGGCGGCGACGCGGCGGGCAAGCAGCCCCCCGATGGCCTGCTCGATGCCGCTAACCTGTTTGGTGCATACTGGGGTCGCGATGGCGGCGGCGGTGGGGGCGCGGCGGCTGCGCAGGCGCAAGCACAAGCACAAGCCGCGCTCTTCGGCTTCGGGTCTCGCTACCCGCCCCCCACCACTCTCGGCGTGGCAGCCAATCAGGCAGCGTCCCTCGGGCTGCATCCAGCTGCCAGTAAGTACAACGGTGCAGCCTGGTGGTCGATGGCTTCCCACCTAGCAGCTCAAGACTACCTAGCGCGACTGCAGGCCTCAGGGTTAAACTTcccacccctggcagacccTTACGCCGCGCTGTCCGCTCTCTCCGGAGGTCAGGGGCTGAAACAGCCGCAGAAACCTGGGAAGTTGTCTAGTCGAAATGAGAGGTCAGGCAGAAGCAGTACATCATCAAGCGCTTCCACAAAAGACAAGAGTCCGTCGACCAGCACCGCCAACTCGCAGAACATGAGATCCTCATACGGTCTTCCGAAGACTTCTTCTCCGTCCGCTATGCACCACTCTGCGTCTCTGTCGAGCCTGGCTTCCCTCAACAGTCTGGTGTCTGCTCCTCATCAGAGCAAGCCCAGTAGCAAGCCGTCTGCCGCGCCACAACCAAGCAAGAagccgtcgtcgtcgtcgtcttCCAGCTCCAAGGGCAAGGAGCGCGAGCTGGCGCTGCTGCGCGGCGACCTCATGCTGGCGCAGGCGGCAGCGCACGGCGCGTACCACGCCGccgtcgccgccgccgccaaGGGGAAGaacatGTCACCGCTGTACCCTTTCGGCATGCCGGGATCAGACAAGGATGGTCGGCATGGTGGGATAGACTCGCTCACTGGGCTGCCCCATACAATACTCAGTGATCCTTCGTCAGTGCTCGGCGGTGTCCGATTACCTCCCGACACGGAAATTATCAAGTATACCTCCTCGTTAGCGGGGCCCAAGGCGGGCTCGGGTACGACTCGCGGCCGCAAGAAGACGATATCGCTGGACCCGCCACACGTCAGCGTGCACCCCGCCGACCGGAACGCGCCTATGCCCAGCAAACGGCCTAAACTTGACGAGTACGGCAACTCCCGGTCGTCGGTGGAAGTGATCCGGCTGCCCAACAAACCGGACCGGGCCGGACACAACTCCATGTCCGGCACTCCCCCACCCAATCTCTCCGATTATGCAGGCATATCCCGAGAGCTGCTACAAACGATAGCTAGTCAGAGCGGCGTGAGCTTGGCCGCGCTGGAGCGCCAGCTGGCGGGCTCCACAGATGCAGGTCTCAACCTAAGCACTAAGATGGGTGAGGACTCTCCGTTAGACCTGGGTGTCAAGTCTTCAGCAATGGATGACGACGCGCCGCTTAACCTGTCGCTCAAACCTACTCCTGCGAGTTCGCAAGCTTCGGACGCTCTCTCGCGACTGACGTCTTTGAGTAGTTCGCTCAACGCGTCCTCCAGCCATGACAGGATATCCCGCCGCAAGCCGGGCGCCAAGCCCCGGCGCGTGGCCCCGGAGATGAGCCCGGTGCCCGACGCGCCGCGCCCCAAGTCCAGTGGCAGCGAGGACAGCGAATCAGTAGCGGGGTGGGCAGGGCGCGAGGGTCGACCACGCAACTTGGGCAGAGGAGTCAGCAAGCCAAAGAAGAATACTGTCGCTTCCTTATTAGCGCAGAGTAGGGCTTTAGGCTTAAGGCCTGCGCTGGCGCATCAGTTGCTGGCTGAGACGGACCTGGAGAAGCTAAAAGCGCTGCTAGGCGAGACTGCAAGCACGGACTCGGAGTGCCCGTCGGACAGCTGTCCGTCCGACTCGGACGCGTCCGACACCAGTCGGAGACCCAACGACGCGCAACTTAGACTGCCTCTAGCGCTGGGATGGAAACGCGTGACTGTGATCAAGGGACTGTCCCGTAACTGCAGCATCAAAGGCGACGTGACGTACTCGCCGCCCGACCCGCAGGCGGGCATCACCATGCGGTCCTTACATGAAATACATAACTTCCTAGACACGAACCCCTGTCCACCACTATCGACGGACAACTTCAGCTTCTCTGCGCGCACAGTGCTCGGGGAGTACATACAGCCGGCTAGCGATGTGGGCGAGCCGCTTGTGTATAACGAGAACGAGATCAATAAGAGACTGGAGGAAGCCCGTATCCTGGCGTCGGCAGGCGGGCGGCCCACGCCGCCGCCGCTGGACCGGCGCATGGAGCTGGCGCGTCTGCAGCAGGCGGCACGCGACGCGCGGCGGGACGCCACGCACCGCTCGCGGGACCAGCATATCAACAAGAATAGAACGCAGTTGACGATCGAGCCCCTCCCTACTGTCCCGAAAACCGGTATCGACGAATGGAAAACCCCTGAGATAGTGATGGGACCAGCTACTAAGACGAATAAGGAACGCACTATGCCACCTATCAGTCTCTCCCTAATACCTGTCAGCGGCCCCAAAGACTCGCAGAACTCCCctataaaaactataaaattcgACCAATCAGGATGGAAGGAAGAAATAGAAGAATACAACGCTTTAGACAAAATGAAAGACTTCGCTGAAAAAGCGGCTTTCGATCTACCAAAACGGAAAGACCATAAACAATACGATTTCACGTTAATAAAATCAGCAGAAAAGCGCTTGAAAGCTCCCGACAAAGAGAACAATCTAGAGAAACTAATAGAATCTTATTCAAGAATAACAGAATTCATAAATGGCTGTGATTGGTCGAAGTTACAAGGGGATAAGAAAATCGAAGACCCAAAATCGATAGAACAGAAATATTTAGACGctaaaaatgaatttatgtCCCAAAATCTGATGTTAATGCCGAAAGACAGTCCGAAATCTGTTTTAAAGGAAGTAATAGAATTGAGCGAAGACGATGACATTTTGACAGATATAATGTCAAAGAAAATCAGTAAAGGGACCTTTAATGTGGGCAAAGACGGCGCCCTGTCGATCTCAGTGCATCCCCTAGGCAAGGATACGTCATCGGTACgtgaaaaataa
- Protein Sequence
- MDKEGGDGGDAAGKQPPDGLLDAANLFGAYWGRDGGGGGGAAAAQAQAQAQAALFGFGSRYPPPTTLGVAANQAASLGLHPAASKYNGAAWWSMASHLAAQDYLARLQASGLNFPPLADPYAALSALSGGQGLKQPQKPGKLSSRNERSGRSSTSSSASTKDKSPSTSTANSQNMRSSYGLPKTSSPSAMHHSASLSSLASLNSLVSAPHQSKPSSKPSAAPQPSKKPSSSSSSSSKGKERELALLRGDLMLAQAAAHGAYHAAVAAAAKGKNMSPLYPFGMPGSDKDGRHGGIDSLTGLPHTILSDPSSVLGGVRLPPDTEIIKYTSSLAGPKAGSGTTRGRKKTISLDPPHVSVHPADRNAPMPSKRPKLDEYGNSRSSVEVIRLPNKPDRAGHNSMSGTPPPNLSDYAGISRELLQTIASQSGVSLAALERQLAGSTDAGLNLSTKMGEDSPLDLGVKSSAMDDDAPLNLSLKPTPASSQASDALSRLTSLSSSLNASSSHDRISRRKPGAKPRRVAPEMSPVPDAPRPKSSGSEDSESVAGWAGREGRPRNLGRGVSKPKKNTVASLLAQSRALGLRPALAHQLLAETDLEKLKALLGETASTDSECPSDSCPSDSDASDTSRRPNDAQLRLPLALGWKRVTVIKGLSRNCSIKGDVTYSPPDPQAGITMRSLHEIHNFLDTNPCPPLSTDNFSFSARTVLGEYIQPASDVGEPLVYNENEINKRLEEARILASAGGRPTPPPLDRRMELARLQQAARDARRDATHRSRDQHINKNRTQLTIEPLPTVPKTGIDEWKTPEIVMGPATKTNKERTMPPISLSLIPVSGPKDSQNSPIKTIKFDQSGWKEEIEEYNALDKMKDFAEKAAFDLPKRKDHKQYDFTLIKSAEKRLKAPDKENNLEKLIESYSRITEFINGCDWSKLQGDKKIEDPKSIEQKYLDAKNEFMSQNLMLMPKDSPKSVLKEVIELSEDDDILTDIMSKKISKGTFNVGKDGALSISVHPLGKDTSSVREK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094944;
- 90% Identity
- iTF_00809166;
- 80% Identity
- -