Basic Information

Insect: Herminia tarsipennalis
Gene Symbol: -
Assembly: GCA_945859575.2
Location: OX243850.1:13331687-13334104[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.5e-09 3e-07 31.1 0.0 1 43 18 60 18 62 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.5e-09	3e-07	31.1	0.0	1	43	18	60	18	62	0.89

Sequence Information

Coding Sequence: ATGCCTCGCAAATATATCAGAAAGATTGGAGCTCCTCCTCGAGCGCAATGGACGCAAGAGGCATTAATAGCTGCAATAGATGAAGTTTCGAAAGGCATTCTTGGTATCAACGAAATATCTCGTAGATATGGGATTCCATCGAGAACATTAAGAAGAAGATTTGCAAACAAAAATACTGAGAAACAGACGCTAGGAAAACACCCAGTTCTTGATTTTGCTAACGAAAAACGTTTGGTGAGCCACATCCAGAAATTAGAAAAAGCTGGTTTTCCTCCAACCAGAGATATGATACGAAGACTGGCATTTGAATTCGCTGAAAAACTGGGTAAAGAAACATATTTTGATAAGGAGGCTAGAAAGGCTGGTCCGCATTGGTTAAGATCATTTTTAGAACGTAATACAGAGCTTAGTATTCGTCAGTCTGAAGGCTTATCGATTGCAAGAGCACAGGGATTAAATCGAAATGAAGTCAACAAAATGTTTGAACTACTGCTTGAAGTGATGACACAGCATGAGTTACTGGATAAACCGGATAGAATTTATAATGTAGATGAGACAGGTGTCCAGTTAAATAATTCTACGGGAAAAGTTATTGCTACAAGAGGCGCAAGAGTAGTTCATTCTATTACTTCTGGTGAAAAGGGTGAAACTCTATCGGTAATAGCATGCTGTAATGCTGTAGGGAACTTTCTCCCCCCAGTGGTCATCATTAAAGGAGTTAACAAGAAACCAGAATTTCAGGATGGACTTCCACCCGGAGCAGAAGTCTATATGAACAGAAAATCTGCGTACGTTAATGCTGAATTATTTCACAAGTGGCTGAAAGAACACCTTGTACCCAAAAAACCGAAAGGAAAAATTATTTTGCTTCTCGATGGTCATTCTTCTCACACAAATGCTATAGATATGCTTCAAACTGCCGAAGAAAATGATATTATTTTATTTTGTCTACCCAGTCACACCACTCAAGCCCTGCAACCACTAGACCGCAGCTTCTTCAAACCTTTCAAAACATTCTTTACAGCTGAAACAAGGAATTGGGTAGTGTCACACAAGGAACGAAAGATTAATCGCTTAGTTGCCGGAAAACTTATTGGGAATGCATGGATCCGAGCGGCCACAAGTTCTAATGCAATTTCGGGATTTAGAGCTTGTGGTATATACCCTTTTAACCCTAGTGCCATCCCAGAGAGCTTTTATTCCATATCTGACATTTCTATGAGTAACCAAAGGTCTGTAGATGATAATGCACTTCAAAATGATGCTCCACAACACGAACAAGATTTGGCCGTTGATCCAATCCTTTCTAACATAACTCCTATTAACATGGACATGGTTTATGCAAATGAAAAAGCTCTTGAACAGGAACCAGGTCCATCCAATGTACAAACTTTGGATGTCTGCCTAAATATACCCGTGTTTTCTCGGGATATAGATCCACCAGATAGGAGACTTTCTAATTCAAGTCCATCAATTCTTTCACAAAATAATAACATATTTAATATTGATGAACCAGAAAAAGAGACACCAAGCAAATATTTGCAAGAGTGTTCGCCTGTGCCAATTATTCCGGTTCCATTTCATAAGAGGGGAAAACAATCGGCTGCAATTTTAAACACAAAAGAAAACATCGAAGCCAAGAAAGCTAAAGTTAAAGGTAAAGCAACTCCAGGAATACCCTGCAAAAATAAATGTCGCTCACCTAAAGCCGTTCTGCAAAAAAAAGTATTAAAAGCTGTAGTTAAGTCTCAAAAAAAAGTGCCGACCAAAAGTACAAAGAAAAGACAGGAAATAAGAGATTCGAGTGATGGAATGACGACCTCAGATATATCCAATGAAACTGATTCAGACATCGATCTAGAGCCTCCAGATGAAGCTGATCTGCTCAGAAAAAAACAAAGATCTAAAGTAAAGTTTCAGAAGAAAGTTCCAGCAAAAATTATAAGGAAAAAACGATTAGAATACATGGAAACAAGTGAAGAAATCTCAAATAATTCGGATGAATCTGCGTCAGATGTACACAAAGATTCGGAATGTAAGGAATGCTTTGAGGAATATAAAAATACCAAATCAATTGCAGATTGGATTCAATGCATAATGTGTACAAAATGGTTACATGAGGATTGTACTATGTACGGCGACTATTGCAATGAATGCGGAAGGATTAAAAGGTTGAATACTTATAAAAAAACAACATAA
Protein Sequence: MPRKYIRKIGAPPRAQWTQEALIAAIDEVSKGILGINEISRRYGIPSRTLRRRFANKNTEKQTLGKHPVLDFANEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETYFDKEARKAGPHWLRSFLERNTELSIRQSEGLSIARAQGLNRNEVNKMFELLLEVMTQHELLDKPDRIYNVDETGVQLNNSTGKVIATRGARVVHSITSGEKGETLSVIACCNAVGNFLPPVVIIKGVNKKPEFQDGLPPGAEVYMNRKSAYVNAELFHKWLKEHLVPKKPKGKIILLLDGHSSHTNAIDMLQTAEENDIILFCLPSHTTQALQPLDRSFFKPFKTFFTAETRNWVVSHKERKINRLVAGKLIGNAWIRAATSSNAISGFRACGIYPFNPSAIPESFYSISDISMSNQRSVDDNALQNDAPQHEQDLAVDPILSNITPINMDMVYANEKALEQEPGPSNVQTLDVCLNIPVFSRDIDPPDRRLSNSSPSILSQNNNIFNIDEPEKETPSKYLQECSPVPIIPVPFHKRGKQSAAILNTKENIEAKKAKVKGKATPGIPCKNKCRSPKAVLQKKVLKAVVKSQKKVPTKSTKKRQEIRDSSDGMTTSDISNETDSDIDLEPPDEADLLRKKQRSKVKFQKKVPAKIIRKKRLEYMETSEEISNNSDESASDVHKDSECKECFEEYKNTKSIADWIQCIMCTKWLHEDCTMYGDYCNECGRIKRLNTYKKTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00794369; iTF_00794359; iTF_00037739; iTF_01026049; iTF_00037743; iTF_00037729; iTF_01264396; iTF_00123309; iTF_00281121; iTF_00037730; iTF_00037731; iTF_01532963; iTF_00037732; iTF_01029188; iTF_01532964; iTF_01029189; iTF_01532965; iTF_00037734; iTF_00037735; iTF_00037736; iTF_00123304; iTF_00037737; iTF_00123305; iTF_00667369; iTF_00123306; iTF_00123307; iTF_01531915; iTF_01533867; iTF_00726254; iTF_00072112; iTF_01192624; iTF_01093010; iTF_01026036; iTF_00237429; iTF_01026037; iTF_01531927; iTF_01440953; iTF_00745595; iTF_01026043; iTF_00745596; iTF_01026044; iTF_00928606; iTF_01440958; iTF_00928607; iTF_01026048; iTF_00038704; iTF_00906075; iTF_00622769; iTF_00622770; iTF_00622771; iTF_01534769; iTF_01026035; iTF_00448981;
90% Identity: iTF_00794369;
80% Identity: -