Xxan021084.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- -
- Assembly
- GCA_905147715.1
- Location
- LR990648.1:22228750-22231047[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.5e-07 0.0004 22.0 0.0 2 42 19 59 18 62 0.81 2 3 8.4 9.5e+03 -1.6 0.0 13 22 132 141 132 144 0.88 3 3 9.7 1.1e+04 -1.8 0.1 14 23 142 150 137 152 0.73
Sequence Information
- Coding Sequence
- ATGCCTCGCAAATATATTAGAAAGGTTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAGGCATTAATAGCTGTAATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGgaaaACACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTGATAAAGAGACTCGAAAGGCTGGGCCGCATTGGTTAACATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAGAGCATGACTTACTGGATAAACCGGATAGGATTTACAATATAGATGAGACAGGTGTCCAGTTAAATAACTCTACTGGAAAAGTCATAGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGGTGAAAAAGGTGAAACTTTATCAGTaatagcatgctgcaatgctgTGGGGAACTTTCTTCCCCCAGTAGTCATCATTAAAGGAGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCTGAATCAGAAGTCTATATGAATAGAAAATCCGCGTACGTGAATGCTGAATTATTTCACAAGTGGCTGAAAGAACATCTTGTACCTAAAAAACCAATAGGAAAGATTATTTTGATTCTGGATGGTCATTCATCTCACACGAATGCTATAGATATGCTTCAAACTGCCGAAGAAaatgatataattttattttgcctACCCAGCCACACCACTCAAGCGCTGCAACCACTGGATCGCAGTTTTTTTAAGCCTTTTAAAACATTCTTTGCTGCTGAAACACAAAATTGGGTAGTGTCACACAAGGAACGAAAGATTAATCGATTAGTTGCAGGAAAACTTATTGGGAATGCGTGGACCCGAGCAGCCACGAGTTCCAATGCGATTTCGGGATTTAGGGCTTGTGGTATTTACCCTTTCAATCCCTCTGCAGTTCCAGAGAGCTTTTTTGCAATATCTGACATTTCTTTGAGTAATCAAAGGCCTACAGAAGACAATGCAGGTGAAAATGATGCACCAGAACCGGAACAAGTTTCATCTAATAGATCAAGTCCTGTAGTTGATCGAGTTCTTTCTAACGTTACTCCTAATTATATGGATATTTATTATAGAAATGAAGAAGCTCTTGAGCAGGAACCAGGTCCATCCAATGTACAAACTCTGGGAGTCGGTCTAAATCTATCCAACGTTTCTCCTTGTAATACGGATCAACCAGATAGGAGATTTTCTAATTCAAGCCCATCAATTCTTTCACagaatactaataatattatcaaCATTGAGGAACTAGAAACACCAAGCAAATATTTGCAAGAATCTTCGCCGGTGCCAATTGTTCCGGTTCCATTTCATAAGAGAGGAAAACAATCAGCTGCAATTTTAAACAGTAAAGAAAATATTGAAGCGAAGAAATCTAAAGTTAAAGGTAAAGCTACTCCAGGAATACgttgtaaaaataaatgtcgAACAGCTACAGCTGATGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGCCAAATGTATTAAGAAAAGAAAGGGCATTAGAGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTCAGATATCGACCAGGCGAGAGCAGGTGAAATTGTtctacataaaaataaacagagATCTCAAGCTAAGATTCAGAGTAAAGTTccagcaaaaaataataagaaaagaCGAATAGAATACAAGGAGTCGAGTGATGAAATATCGATCTCAAATAATTCGGATGAATCTGAGTCAGAGGCATACAAGGATTGGGAATGCAAAGAATGCTCTGAAGAATATAAAAAGACCAAATCAACTGCAGATTGGATACAATGTTTAATGTGTAAAAAATGGCTACATGAGGATTGTACCATGTACGGCGACTATTGCAATAAATGCGGTAGGATTAAACGAATGAATACGAAAAAATACAAGTAG
- Protein Sequence
- MPRKYIRKVGVRPRAEWTQEALIAVIDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFDKETRKAGPHWLTSFLERNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTEHDLLDKPDRIYNIDETGVQLNNSTGKVIATRGARVVHSITSGEKGETLSVIACCNAVGNFLPPVVIIKGVNKKPEFQDGLPPESEVYMNRKSAYVNAELFHKWLKEHLVPKKPIGKIILILDGHSSHTNAIDMLQTAEENDIILFCLPSHTTQALQPLDRSFFKPFKTFFAAETQNWVVSHKERKINRLVAGKLIGNAWTRAATSSNAISGFRACGIYPFNPSAVPESFFAISDISLSNQRPTEDNAGENDAPEPEQVSSNRSSPVVDRVLSNVTPNYMDIYYRNEEALEQEPGPSNVQTLGVGLNLSNVSPCNTDQPDRRFSNSSPSILSQNTNNIINIEELETPSKYLQESSPVPIVPVPFHKRGKQSAAILNSKENIEAKKSKVKGKATPGIRCKNKCRTATADVQKKVLRTAVKFPKKIPAKCIKKRKGIRESSDEMTISDISNESDSDIDQARAGEIVLHKNKQRSQAKIQSKVPAKNNKKRRIEYKESSDEISISNNSDESESEAYKDWECKECSEEYKKTKSTADWIQCLMCKKWLHEDCTMYGDYCNKCGRIKRMNTKKYK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794357;
- 90% Identity
- iTF_00037739;
- 80% Identity
- -