Xrho030364.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970781.1:10119591-10121885[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-09 9.1e-07 29.5 0.0 1 42 18 59 18 62 0.89 2 3 6.9 4.8e+03 -1.6 0.0 13 22 132 141 132 144 0.88 3 3 8.1 5.6e+03 -1.8 0.1 14 23 142 150 137 152 0.73
Sequence Information
- Coding Sequence
- ATGCCTCGCAAGTATATTAGAAAGGTTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAGGCATTAATAGCTGCAATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGgaaaaCACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTGATAAAGAGACTCGAAAGGCTGGGCCGCATTGGTTAACATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAGAGCATGACTTACTGGATAAACCGGATAGGATTTACAATGTAGATGAGACAGGTGTCCAGTTAAATAACTCTACTGGAAAAGTCATAGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGGTGAAAAAGGTGAAACTTTATCAGTAATAGCATGCTGCAATGCTGTGGGGAACTTTCTTCCCCCAGTAGTCATCATTAAAGGAGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCTGGATCAGAAGTCTATATGAATAGAAAATCCGCGTACGTGAATGCTGAATTATTTCACAAGTGGCTGAAAGAACATCTTGTACCTAAAAAACCAATAGGAAAGATTATTTTGATTCTGGATGGTCATTCATCTCACACGAATGCTATAGATATGCTTCAAACTGCCGAAGAaaatgatataattttattttgcctaCCCAGCCACACCACTCAAGCGCTGCAACCACTGGATCGCAGTTTTTTTAAGCCTTTTAAAACATTCTTTGCTGCTGAAACACAAAATTGGGTAGTGTCACACAAGGAACGAAAGATTAATCGATTAGTTGCAGGAAAACTTATTGGGAATGCGTGGACCCGAGCAGCCACGAGTTCCAATGCGATTTCGGGATTTAGGGCTTGTGGTATTTACCCTTTCAATCCCTCTGCAGTTCCAGAGAGCTTTTTTGCAATATCTGACATTTCTTTGAGTAATCAAAGGCCTACAGAAGACAATGCAGGTGAAAATGATGCACCAGAACCGGAACAAGTTTCATCTAATAGATCAAGTCCTGTAGTTGATCGAGTTCTTTCTAacgttactcctaattatatggATATTTATTATAGAAATGAAGAAGCTCTTGAGCAGGAACCAGGTCCATCCAATGTACAAACTCTGGGAGTCGGTCTAAATCTATCCAACGTTTCTCCTTGTAATACGGATCAACCAGATAGGAGATTTTCTAATTCAAGCCCATCAATTCTTtcacagaataataatattatcaacatTGAGGAACTAGAAACACCAAGCAAATATTTGCAAGAATCTTCGCCGGTGCCAATTGTTCCGGTTCCATTTCATAAGAGAGGAAAACAATCAGCTGCAATTTTAAacagtaaagaaaatattgaagCGAAGAAATCTAAAGTTAAAGGTAAAGCTACTCCAGGAATacgttgtaaaaataaatgtcgaaCAGCTACAGCTCATGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGCCAAATGTATTAAGAAAAGAAAGGGCATTAGAGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTCAGATATCAACCAGGCGAGAGCAGGTGAAATTGTTCTACATACAAAAAAACAGAGATCTCAAGCTAAGATTCAGAGTAAAGTTCcagcaaaaaataataagaaaagacGAATAGAATACAAGGAGTCGAGTGATGAAATATCGATCTCAAATAATTCGGATGAATCTGAGTCAGAGGCATACAAGGATTGGGAATGCAAAGAATGCTCTGAAGAATATAAAAAGACCAAATCAACTGCAGATTGGATACAATGTTTAATGTGTAAAAAATGGCTACATGAGGATTGTACCATGTACGGCGACTATTGCAATAAATGCGGTAGGATTAAACGAATGAATACGAAAAAATACAAGTAG
- Protein Sequence
- MPRKYIRKVGVRPRAEWTQEALIAAIDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFDKETRKAGPHWLTSFLERNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTEHDLLDKPDRIYNVDETGVQLNNSTGKVIATRGARVVHSITSGEKGETLSVIACCNAVGNFLPPVVIIKGVNKKPEFQDGLPPGSEVYMNRKSAYVNAELFHKWLKEHLVPKKPIGKIILILDGHSSHTNAIDMLQTAEENDIILFCLPSHTTQALQPLDRSFFKPFKTFFAAETQNWVVSHKERKINRLVAGKLIGNAWTRAATSSNAISGFRACGIYPFNPSAVPESFFAISDISLSNQRPTEDNAGENDAPEPEQVSSNRSSPVVDRVLSNVTPNYMDIYYRNEEALEQEPGPSNVQTLGVGLNLSNVSPCNTDQPDRRFSNSSPSILSQNNNIINIEELETPSKYLQESSPVPIVPVPFHKRGKQSAAILNSKENIEAKKSKVKGKATPGIRCKNKCRTATAHVQKKVLRTAVKFPKKIPAKCIKKRKGIRESSDEMTISDISNESDSDINQARAGEIVLHTKKQRSQAKIQSKVPAKNNKKRRIEYKESSDEISISNNSDESESEAYKDWECKECSEEYKKTKSTADWIQCLMCKKWLHEDCTMYGDYCNKCGRIKRMNTKKYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794357;
- 90% Identity
- iTF_00037739;
- 80% Identity
- -