Ppra053766.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621259.1:1808635-1810755[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-08 5.4e-06 28.0 0.0 2 42 19 59 18 62 0.88
Sequence Information
- Coding Sequence
- aTGCCTCGcaaatatattagaaaggtTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAGGTATTAATAGCTGCAATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATACGCTAACAAAAATACGGAAAAACTGACATTAGgaaaaCACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTCAAGAAACCAATTTTAATATGGAGACTCGAAAGGCTGGGCCGCATTGGTTAAGATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAGAGCATGACTTACTGGATAAACCGGATAGGATTTACAATGTAGATGAAACAGGTGTCCAGTTAAATAACTCTACTGGTAAAGTCATTGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGGTGAAAAAGGTGAAATTTTATCGGTAGTAGCATGCTACAATGCTGTAGGGAACTTTCTTCCCCCAGTAGTCATCATCAAAGGAGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCTGGATCAGAAGTCTATATGAATAGAAAATCCGCCCACACCACTCAAGCGCTGCAACCACTGGATCGCAGTTTTTTTAAGcctttaaaaacattatttactgCTGAAACACAAAATTGGGTAGTGTCACACAAGGAACGAAAGATTAATCGATTAGTTGCAGGAAAACTTATTGGGAATGCGTGGACCCGAGCAGCCACAAGTTCTAATGCGATTTCGGGATTTAGGGCTTGTGGTATTTACCCTTTCAATCCCTCTGCAGTTCCAGAGAGCTTTTTTGCAATATCTGACATTTCTTTGAGTAATCAAAGGCCTACAGAAGACAATGCAGGTGAAAATGATGCACCAGAACTGGAACAAGTTTCATCTAATAGATCAAGTCCTGTAGTTGATCGAGTTCTTTCTAACGTTACTCCtaattatatggatattttttatagaaatgaAGAAGCTCTTGAGCAGGAACAAGGTCCATCCAATGTACAAACTCTGGGAGTCGGTCTAAATCTATCCAACGTTTCTCCTTGTAATACAGATCGACCAGATAGGAGTTTTTCTAATTCAAGCCCATCAATTCTTTCAcagaataataacattataaacatTGAGGAACTAGAAACACCAAGCAAATATTTGCAAGAATCTTCGCCGGTGCCAATTGTTCCGGTTCCATTTCATAAGAGAGGAAAACAATCAGCTGCAATTTTaaacactaaagaaaatattgaaGCGAAGAAATCTAAAGTTAAAGGTAAAGCTACTCCAGGAATAcgttgtaaaaataaatgtcgaACAGCTAAAGCTGATGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGCCAAATGtattaagaaaagaaaaggcattagaGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTCAGATATCGACCAGGCGAGAGCAGGTGAAATTGAtctgcataaaaaaaaacagagatCTCAAGCTAAGATTCAGAGTAAAGTTCcagcaaaaaataataagaaaagacgAATAGAATACAAGGAGTCGAGTGATGAAATATCGATCTCAAATAATTCGGATGAATCTGAGTCAGAGGAGGAATAA
- Protein Sequence
- MPRKYIRKVGVRPRAEWTQEVLIAAIDEISRGILGINEISRRYGIPSRTLRRRYANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGQETNFNMETRKAGPHWLRSFLERNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTEHDLLDKPDRIYNVDETGVQLNNSTGKVIATRGARVVHSITSGEKGEILSVVACYNAVGNFLPPVVIIKGVNKKPEFQDGLPPGSEVYMNRKSAHTTQALQPLDRSFFKPLKTLFTAETQNWVVSHKERKINRLVAGKLIGNAWTRAATSSNAISGFRACGIYPFNPSAVPESFFAISDISLSNQRPTEDNAGENDAPELEQVSSNRSSPVVDRVLSNVTPNYMDIFYRNEEALEQEQGPSNVQTLGVGLNLSNVSPCNTDRPDRSFSNSSPSILSQNNNIINIEELETPSKYLQESSPVPIVPVPFHKRGKQSAAILNTKENIEAKKSKVKGKATPGIRCKNKCRTAKADVQKKVLRTAVKFPKKIPAKCIKKRKGIRESSDEMTISDISNESDSDIDQARAGEIDLHKKKQRSQAKIQSKVPAKNNKKRRIEYKESSDEISISNNSDESESEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794357;
- 90% Identity
- iTF_01264391;
- 80% Identity
- -