Hrub002161.1
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- Rel
- Assembly
- GCA_028454235.1
- Location
- CM052182.1:9087074-9091338[+]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.48 2.8e+03 -1.9 0.0 56 76 13 33 8 46 0.83 2 2 1.4e-39 8e-36 123.5 1.0 1 168 80 270 80 271 0.87
Sequence Information
- Coding Sequence
- ATGCCAGAGGTTTTTGAAAATTATGCCGTTTACAAAAGTGTAACCGAAAACGAGGATTATTCTTCTCACGGACATGATTTGCTAATGATGAATACTCAAGATGCATTTAGTCCCTTTAATGGATCTCAAGGGGTAAGTGCTGCATCACCTTCTTCAACATTTTTGTCATCGTCTCTGTCACCACTGTATAACATGGATGTGAGTTTTAAAGATGTCACAGTTATTGGTGAACCATATCTTACAATCGTGGAGCAGCCAATTGACAAATTTCGATTTCGATATAAATCAGAGATGATAGGAACACATGGAAGTTTAGTAGGATCAAATGTTGGAAGTGGTCGCAATAAACATTACCCAGCAGTTCAGTTACATAATTTTCCTACAAGTGCAAAAATACAATGTACATTAGTTACATCTGAAGAGGGTAAAAGGATACCTCATGCCCATAGATTGGTACGTAGAGTAAATGGGGAGGATTACGATGATCCCCATATAATCGATGTCACTCCGGAGAATAATTTTATTGCAACATTTCATGGGATGGGAATTATACACACAGCAAAGAAATATGTACGAGAAGAACTTATTAAAAAAATGCGACATGAAGCAATAGAGAAAAAAAAAAGAGAATATGGAAGTGATACCCTTACTACACGAGAAGAAGCTCAAATCAAACATGATGCAGATATTTATCAAAAATGTGTGAACCTAAATAGTGTTGCACTATGTTTTCAAGCATTCATTTTGGATGAACGCAATGTTATGAGACCAATACAAAACTGTACTGTTTATTCAAAACCTATTAATAATCTGAAAAGTGCATTAACTGGAGAACTGAAAATATGCAGAATTGACAAACACACTAGCAGTGTTGATGGAGATGAAGAAGTTTTCCTACTCGTAGAAAAAGTAGGAAAAAAAAACATAAAAGTAAGATTTTTTGAGGTAGATGAGGATAATAGCGAAGTTTGGAGTGACTATGGACGTTTCTCAGAATTGGATGTACATCATCAATATGCAATTGTATTTCGAACACCAAGATATAAAGATTCTACTATTACATCCCCAAAGGAAGTCTTCTTGCAACTAGAAAGACCAACTGATGGTGACTGTTCCGAGCCAATAAAATTTATTTATAAACCAAGCGATAGAATTATAGGAAAGAAGCGTCAAAGAATGTCCTACTCTGGAAGTAGCGATTTATCGAACTTCGTATTACCCAATTGTAATAGTGAAATAGGAAATATATCAGGAATTTCAAATGGAGATAGTCGAGAAATTTCTCAAGAGATAAAAAAGTTTTTCCCACAGACTGAAAACGTACATACAGTTTTTGATAATATAAATATTGATGAATATATTGCAGAATTGAACGAAGAGTTATTGACGACTGATGGCCCATCATCTAAACAGCATGAAAATGATATAATGTTTCCTAAAAATATACTTATGGAAGCTATGAGATACATGAAATTAGATCCGAAAAATGGTCAAACACAGATACGTAAGCTACTTAAATATCGTTCCACTTTTGGAGATTCTCCATTGCACGCAGCACTTCGGTACGATCAACGTGACATTGTCAAGTACATATTAATGCTGATAAGCTCTGATAAGGATTGCAAGATACTTGTCAATGAACAGAATAGCTCTGGCAAAACGCCGCTGCATTATGCAGTTCTACAAAATCTTCCAGAAAGTATAAAAGCACTACTCGTGCTTGGAGCTGATCCAAACCGATCAGATGAACAGGGATGTTGTCCATTACACATTGCTGTTAAAAATCCTCAAGCTGGTGCTTGTGTGAGAACTTTATTATCAGATAAAAAAACTAAAATGGAAATTCATAATGATGCTGGATGGACACCATTGCAACTTGCAGCAGAAGCTGGTTCATACACTGCAGTATGTTTACTTGTTGAAGCTGGGGTAAATGTAAATAGTACCGATATGTCATATGGTCGAACTGCATTACACATTGCTGTAGATGGCGGACACAAAGATATTGTTGAATATTTATTGAAAAAGACAAACATTGACATAAACAAAAGAAACTTCAGTGGAAATACTGCTTTACACTCAGCAGTTGTATATTCTGGTGTAAGAGCAAAAGAGTTGTGTGCATTGTTAATCAAATATGGAGCAGATCCACATATTCAAAATCACAATAGAGAAACAAGCGATGATGAAAGGAAGACCACACATGTAAAGGAAGAAGTTAACTCTGACGATGAAAACTCTGAAGAATTGAATGGACAATCGTCGTTTGATTTGGCGATGAGCAAACCAGATATTTTGCAACTTCTTAACGGTCAAACTGAAGAAGCACCAAGTGAAATTTCTTCCGTTTTCACTAAACAAGAAATACAAGATGAGGACTCGCAGCAGGAATTGTTAAACAATGAGCAGAAACAACAATTGTCCAATATTCTTGATGAAACACAAGGATGGAGAAAACTTGCTAAACATTTGAAATTTGAATCCTTTTTAAGGACATTACAACATACTTCGTTGAGCCCATCACTACTCCTATTAAATTACATAGACGTTCAGTCATTGATGTCCCTAACCGATCTGGAAAGGGCATTAAGAGATATTGATGAAACCAAAGCGGCGAATTACGTTAATGGAATCATAAGTGTACACATGCAGTCTTAA
- Protein Sequence
- MPEVFENYAVYKSVTENEDYSSHGHDLLMMNTQDAFSPFNGSQGVSAASPSSTFLSSSLSPLYNMDVSFKDVTVIGEPYLTIVEQPIDKFRFRYKSEMIGTHGSLVGSNVGSGRNKHYPAVQLHNFPTSAKIQCTLVTSEEGKRIPHAHRLVRRVNGEDYDDPHIIDVTPENNFIATFHGMGIIHTAKKYVREELIKKMRHEAIEKKKREYGSDTLTTREEAQIKHDADIYQKCVNLNSVALCFQAFILDERNVMRPIQNCTVYSKPINNLKSALTGELKICRIDKHTSSVDGDEEVFLLVEKVGKKNIKVRFFEVDEDNSEVWSDYGRFSELDVHHQYAIVFRTPRYKDSTITSPKEVFLQLERPTDGDCSEPIKFIYKPSDRIIGKKRQRMSYSGSSDLSNFVLPNCNSEIGNISGISNGDSREISQEIKKFFPQTENVHTVFDNINIDEYIAELNEELLTTDGPSSKQHENDIMFPKNILMEAMRYMKLDPKNGQTQIRKLLKYRSTFGDSPLHAALRYDQRDIVKYILMLISSDKDCKILVNEQNSSGKTPLHYAVLQNLPESIKALLVLGADPNRSDEQGCCPLHIAVKNPQAGACVRTLLSDKKTKMEIHNDAGWTPLQLAAEAGSYTAVCLLVEAGVNVNSTDMSYGRTALHIAVDGGHKDIVEYLLKKTNIDINKRNFSGNTALHSAVVYSGVRAKELCALLIKYGADPHIQNHNRETSDDERKTTHVKEEVNSDDENSEELNGQSSFDLAMSKPDILQLLNGQTEEAPSEISSVFTKQEIQDEDSQQELLNNEQKQQLSNILDETQGWRKLAKHLKFESFLRTLQHTSLSPSLLLLNYIDVQSLMSLTDLERALRDIDETKAANYVNGIISVHMQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00862344; iTF_00762329; iTF_00864416; iTF_00861665; iTF_00860163; iTF_00860906; iTF_00863055; iTF_00865101; iTF_00863738; iTF_00865788; iTF_00866485;
- 90% Identity
- iTF_00762329;
- 80% Identity
- -