Esub029297.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751126.1:5223013-5225855[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.015 1.2 10.5 0.3 1 23 85 108 85 108 0.86 2 18 0.07 5.7 8.4 0.1 2 23 139 161 138 161 0.92 3 18 0.0007 0.057 14.7 1.4 1 23 183 205 183 205 0.99 4 18 0.093 7.5 8.0 0.7 1 23 209 231 209 231 0.90 5 18 0.00054 0.044 15.1 0.3 1 23 236 259 236 259 0.89 6 18 0.00055 0.044 15.1 1.9 1 23 265 288 265 288 0.96 7 18 0.00099 0.08 14.3 3.2 1 23 295 318 295 318 0.97 8 18 5.8e-05 0.0047 18.1 0.2 3 23 326 346 325 346 0.99 9 18 3.4e-07 2.7e-05 25.2 1.2 1 23 352 374 352 374 0.99 10 18 3.4e-05 0.0027 18.9 5.5 1 23 380 402 380 403 0.96 11 18 0.058 4.7 8.7 0.2 1 23 532 554 532 554 0.97 12 18 1.2 1e+02 4.5 0.1 1 23 626 648 626 648 0.90 13 18 0.0007 0.057 14.7 0.2 1 23 652 674 652 674 0.98 14 18 0.02 1.6 10.1 1.3 1 23 679 702 679 702 0.95 15 18 0.0079 0.64 11.4 0.4 2 23 709 731 709 731 0.93 16 18 0.0022 0.17 13.2 6.1 1 23 738 761 738 761 0.97 17 18 3.4e-05 0.0027 18.9 0.7 2 23 768 789 767 789 0.96 18 18 3.6e-05 0.0029 18.8 0.6 1 23 795 817 795 817 0.99
Sequence Information
- Coding Sequence
- ATGTTTATGTATTTCATTAATTTGGGCCAATTAAAACAGAAAGATTCTCATCACGctgtttttcttattttaggTGTTGATGAGCACACTCCACACGAGACTAAAGAAGACACACTCGCTCAAAACAATACAGAAACCCAAACACTGACTGTAGTCAATAAAACAGACCCCGAGGAGCAAGCCAGGAAGGATAGCGTCTTGACGCTTCTAGAATGTTCCAGAATATGCCCTTTCAAATGGGCAAAAAATTTATACTTCTGTATTTACTGCGAAGAATCATTCGCTGACCCCGCAAAACTGCGTAAGCACACATTCGCAGAACACGACAATATTCGACCAGAGGAGATTAGACAGAGATTGATATTAATCGGAAGAAAAAGGCACGAGTTCCTTAAAACAGACATTACAGATCTTAGCTGTAAACTTTGTGACGCACCTATAATCTCACTGGACCATCTAAAAGCGCATCTCATCgaaaaacacaaaaagaaaATCAACCTAAAATCCCACCTTGGGATACTCCCGTTCAAAATCAACGTCGACGATTACAAATGCGTCATTTGCGATGAAAAATACGGAGAATACAAGACTTTAAACCATCACATGAACGTTCATTTTCAGAACTTCATTTGTGAGCAATGCGGTTCTGGTTTCATAACTCCTGCACGGTTACGGGTCCACTGCTTCACCCACGAAACCGGTTCCTTTCCATGTAGTGATTGTAACAAAGTCTTTCGCTCCAGCAACGCTAATAAAGAACACTACGCCGATGTACACTTAAAGGTTAAAAGACACAGATGCCCTCAATGCCCTGAGACGTTCAGAAACTACTTTCAAAGAACAAAGCACATATCAATCGCTCACGGGGTCAAGTTGAAAGAATTCAAGTGTGAATACTGCCCTAAAGTCTTCCACTACAGCGGGAAAATGACTGGTCACATTCGACACGCGCATCTAAAAGAAAAACGCCATGGTTGTGACTTATGCGACTGGAAATTTTACTCTGCGTATGAATTGAAACAGCATATGATAAAACACGGTGGAGAGAGAAAGTATCAGTGCAATGTATGCAAGAAAGCTTATGCAAGGAAGTATACCCTCCGAGAGCATATGAGGATACATGAGAATGATAGACGATTTGTTTGCACGGTTTGCGGGAAGTCGTTTGTGCAGGCATGTAGTTTGAAACACCACTCTAGGATTCATCATCCGTCGGCCCCGAAAGTTTTCAGTGAAATGAATCAAGGAAACCAAATAGCTGCGACGAAGCAAACGAAAATTGTGCCACTCTTCCAAGTGGCTTACGATCGCAGTCTCTGCAAACCTCTTGGAACGATCTCAGACTTCAGAAAACTGCAAAGAACACAGAATATATCACCCTCGGACACTATCGTGTACGAAAACTCTCGAAGCCCATCGCCAGCTTGCCCCAGAACCCCATCACCGTACGCTCCCGAAGAACAATCAGACATCAATCCACCTGCGAAGTATCTACTGAAACAACAACCTGCGAAGGTCTCCGATTGCAGACAGAACGCTCTTTTAGTTTTCGAATACTCCACCGCTTACCCTTTCATATTCTCAAACAACAGTTACAGGTGCTTTGTCTGCTCCGAATCGTATTTAGACGTTCCGAACCTAAAGATCCACATGTCGGAACACTCTTTCGCTCATATCAAACGACTAATGAACAACAGAAAGGAGAATGTTCTTAAAGTTGACGTCAGTGAACTGACTTGCAAACTCTGCATGCTGCCTATGAGAGATTTGGTCATATTGAAGCATCATCTTAAGAACGAGCACAATAAGCCGGTAGATACAGAGCTGCAAGACAACCTGGTGCCTTATGATCTAACCATACACGGCCCTGAGGGGTACCAGTGCGTTGTATGCGAGCAGAATTTTATCAAAGTCCGTATCCTCGTCATTCACATGAGCGATCACTTCAGCAACTATAGCTGCGAAGTCTGCGGATCGGGTTTTATGACACTACGGCTGCTAAAGAAACATCTGGAAGTCCACGAGACGGGAAACTTCCCTTGCGATCGTTGCAGTAAAATCTTCAGCACTACGCACAAAAGGGCTTTGCATATCCGCGGGGTTCATATGAAACTGTGCCCGCGGCGGTGTCCCATGTGCCCCGAGCGGTTCAACTCTAACTACAAACGAACAATACACCTCCAAGACGTACATAATCAATCCACTAGAGTCCATAAATGTAAAACATGCGGTCGTGGTTTCCACCTTAAGTATCATTTGATAAGCCACGTGCGTTCCGTGCATTTGCAAGAGCGGAATCAACAGTGCGATGTGTGTCTACAACGGTTTTCTAATAAAGAGTCCTTGAAGCGACATATGGTGGTTCATACTGGAGAAAAGAACTATAAATGTGAAGTTTGTGGAATGGCGTTCTTGAGGAGGAAGAATTTGAAGGATCATTTACGGTTGCATGAGATTCATTAA
- Protein Sequence
- MFMYFINLGQLKQKDSHHAVFLILGVDEHTPHETKEDTLAQNNTETQTLTVVNKTDPEEQARKDSVLTLLECSRICPFKWAKNLYFCIYCEESFADPAKLRKHTFAEHDNIRPEEIRQRLILIGRKRHEFLKTDITDLSCKLCDAPIISLDHLKAHLIEKHKKKINLKSHLGILPFKINVDDYKCVICDEKYGEYKTLNHHMNVHFQNFICEQCGSGFITPARLRVHCFTHETGSFPCSDCNKVFRSSNANKEHYADVHLKVKRHRCPQCPETFRNYFQRTKHISIAHGVKLKEFKCEYCPKVFHYSGKMTGHIRHAHLKEKRHGCDLCDWKFYSAYELKQHMIKHGGERKYQCNVCKKAYARKYTLREHMRIHENDRRFVCTVCGKSFVQACSLKHHSRIHHPSAPKVFSEMNQGNQIAATKQTKIVPLFQVAYDRSLCKPLGTISDFRKLQRTQNISPSDTIVYENSRSPSPACPRTPSPYAPEEQSDINPPAKYLLKQQPAKVSDCRQNALLVFEYSTAYPFIFSNNSYRCFVCSESYLDVPNLKIHMSEHSFAHIKRLMNNRKENVLKVDVSELTCKLCMLPMRDLVILKHHLKNEHNKPVDTELQDNLVPYDLTIHGPEGYQCVVCEQNFIKVRILVIHMSDHFSNYSCEVCGSGFMTLRLLKKHLEVHETGNFPCDRCSKIFSTTHKRALHIRGVHMKLCPRRCPMCPERFNSNYKRTIHLQDVHNQSTRVHKCKTCGRGFHLKYHLISHVRSVHLQERNQQCDVCLQRFSNKESLKRHMVVHTGEKNYKCEVCGMAFLRRKNLKDHLRLHEIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702219;
- 90% Identity
- iTF_00700325; iTF_00702219; iTF_00706260; iTF_00697594; iTF_00705306;
- 80% Identity
- -