Evul025030.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000189.1:626829-630189[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.014 1.1 10.6 0.3 1 23 70 93 70 93 0.86 2 18 0.17 13 7.1 0.1 2 23 124 146 123 146 0.92 3 18 0.00066 0.05 14.8 1.4 1 23 168 190 168 190 0.99 4 18 0.087 6.5 8.1 0.7 1 23 194 216 194 216 0.90 5 18 0.00051 0.038 15.1 0.3 1 23 221 244 221 244 0.89 6 18 0.00049 0.036 15.2 1.9 1 23 250 273 250 273 0.96 7 18 0.00093 0.069 14.3 3.2 1 23 280 303 280 303 0.97 8 18 5.4e-05 0.0041 18.2 0.2 3 23 311 331 310 331 0.99 9 18 3.2e-07 2.4e-05 25.2 1.2 1 23 337 359 337 359 0.99 10 18 3.2e-05 0.0024 18.9 5.5 1 23 365 387 365 388 0.96 11 18 0.046 3.5 8.9 0.2 1 23 512 534 512 534 0.97 12 18 1.2 87 4.5 0.1 1 23 606 628 606 628 0.90 13 18 0.00066 0.049 14.8 0.2 1 23 632 654 632 654 0.98 14 18 0.019 1.4 10.2 1.3 1 23 659 682 659 682 0.95 15 18 0.0075 0.56 11.4 0.4 2 23 689 711 689 711 0.93 16 18 0.002 0.15 13.2 6.1 1 23 718 741 718 741 0.97 17 18 3.2e-05 0.0024 18.9 0.7 2 23 748 769 747 769 0.96 18 18 3.3e-05 0.0025 18.8 0.6 1 23 775 797 775 797 0.99
Sequence Information
- Coding Sequence
- ATGTTCAGTTGGTCGAGAATGGgtGTTGATGAGCTCGCTCCACACGAGGCTAAAGAAGAAACACTCACACTCACTCAAAACAATACAGAAACTGAAACACTCACTGTAGTCAATAAAACAGATCCCGAGGAGCAAGCCAGGAAGGATAGCGTCTTGACGCTTCTAGAATGTTCCAGAATATGCCCTTTCAAATGGGCGAAAAACTTATACTTCTGTATTTACTGCGAAGAGTCATTCGCTGACCCCGCTAAACTGCGTAAGCACACATTCGCAGAACACGACAATATTCGCCCAGAGGAGATTAAACAGAGATTGATATTAATCGGAAGAAAACGGCACGAGTTTCTTAAAACAGACATCACAGATCTTAGCTGTAAACTTTGCGACGCATCTATAATGTCACTAGACTATCTCAAAGCACATCTcatagaaaaacataaaaagaaaatcaaCCTAAAATCCCACCTTGGTATACTCCCGTTCAGAATCAACGTCGATGATTACAAATGCGTAATTTGCGATGAAAAATACGGAGAATACAAGACTTTAAACCATCACATGAACGTTCATTTTCAGAACTTCATTTGTGAACAATGCGGTTCCGGTTTCATAACCCCCGCACGGTTACGAGTCCACTGCTTCACTCACGAAACCGGTTCCTTTCCTTGCAGCGATTGTAACAAAGTTTTTCGCTCTAGCAACGCGAATAAAGAACACTACGCCGACGTACACTTGAAGGTTAAAAGACACAGATGCCCTCAATGCCCCGAGACGTTCAGAAACTACTTTCAGAGAACAAAGCACATATCTGTCGCTCACGGGGTCAAGTTGAAAGAGTTCAAGTGTGAATACTGCCCTAAAGTCTTCCACTACAGCGGGAAAATGACTGGCCATATTCGACATGCGCATCTAAAAGAAAAACGGCATGGTTGTGATCTATGCGACTGGAAATTTTACTCCGCGTATGAATTGAAACAGCATATGATAAAACACGGTGGCGAGAGAAAGTATCAGTGCAATGTCTGCAAGAAAGCGTATGCAAGGAAGTATACCCTCCGAGAGCATATGAGGATACATGAGAATGACAGACGATTTGTGTGCACGGTTTGCGGGAAATCGTTTGTGCAGGCGTGTAGTTTGAAACACCACTCTAGGATCCACCATCCGTCGGCCCCGAAAGGAAACCAAATAGCTGTCGCGACGAAGCAAACGAGAGTTGTGCCACTCTTCCAAGTGGCTTACGATCGCACCCTCTGCAAACCTCTCGGAACGATCGCAGACTTCAGTAAACTGCAAAGAACACAGAATATCTCACTCTCAGACACTATCGTGTACGAAAACTCCCGAAGTCCATCGCCAGTTTGTCCCAGAACCCCATCACCGTACGCTCCCGAAGAACAAACAGACATCAATCCACCTGCAAAGTATCTACTAAAACCACAACCTGCGAGAAAGGTCTCCGATTGCAGACAGAATGCTCTCATAGTCTTCGAATACTCTACCGCTTACCCTTTCATATTCTCAAACAACAGTTACAGATGCTTTGTCTGCTCCGAATCATATTTAGACGTTCCAAACCTTAAGGTCCACATGTCGGAACACCCTTTCGCTCATATAAAACGACTAATGAACAACAGAAAGGAGAATGTTCTTAAAGTCGACGTCAGCGAACTGACTTGCAAAATCTGCATGCTGCCTATGAGAGATTTGGTAATATTAAAGCATCATCTCAAAAACGAGCACAATAAGCCGGTAGATACGGAGCTGCAAGACAACCTGGTGCCTTACGATCTGACCATACACGGTCCTGAGGGCTACCAGTGCGTTGTTTGTGAGCAGAACTTCATCAAAGTCCGTATTCTCGTCATACACATGAGTGATCATTTCAGCAACTATAGCTGTGAAGTCTGCGGATCAGGTTTCATGACACTACGGCTGCTAAAGAAGCATCTCGAAGTCCACGAGACGGGTAACTTCCCTTGTGATCGCTGCAGCAAAATATTCAGCACTACGCACAAAAGGGCGTTGCATATCCGCGGGGTTCATATGAAACTGTGCCCGCGGCGTTGCCCAATGTGTCCAGAGCGGTTCAACTCTAACTACAAACGGACAATACATCTCCAAGACGTGCACAACCAATCCACAAGAGTACATAAATGCAAGACGTGCGGTCGTGGTTTCCACCTCAAGTATCATTTGATAAGCCACGTGCGTTCCGTGCATTTGCAAGAGCGGAATCAACAATGTGATGTGTGTCTACAGCGGTTTTCTAATAAAGAGTCCTTGAAGCGGCATATGGTCGTTCATACTGGAGAGAAGAATTATAAATGTGAAGTTTGCGGAATGGCGTTCTTGAGACGAAAGAATCTAAAGGATCATTTACGGTTGCATGAGATTCACTGA
- Protein Sequence
- MFSWSRMGVDELAPHEAKEETLTLTQNNTETETLTVVNKTDPEEQARKDSVLTLLECSRICPFKWAKNLYFCIYCEESFADPAKLRKHTFAEHDNIRPEEIKQRLILIGRKRHEFLKTDITDLSCKLCDASIMSLDYLKAHLIEKHKKKINLKSHLGILPFRINVDDYKCVICDEKYGEYKTLNHHMNVHFQNFICEQCGSGFITPARLRVHCFTHETGSFPCSDCNKVFRSSNANKEHYADVHLKVKRHRCPQCPETFRNYFQRTKHISVAHGVKLKEFKCEYCPKVFHYSGKMTGHIRHAHLKEKRHGCDLCDWKFYSAYELKQHMIKHGGERKYQCNVCKKAYARKYTLREHMRIHENDRRFVCTVCGKSFVQACSLKHHSRIHHPSAPKGNQIAVATKQTRVVPLFQVAYDRTLCKPLGTIADFSKLQRTQNISLSDTIVYENSRSPSPVCPRTPSPYAPEEQTDINPPAKYLLKPQPARKVSDCRQNALIVFEYSTAYPFIFSNNSYRCFVCSESYLDVPNLKVHMSEHPFAHIKRLMNNRKENVLKVDVSELTCKICMLPMRDLVILKHHLKNEHNKPVDTELQDNLVPYDLTIHGPEGYQCVVCEQNFIKVRILVIHMSDHFSNYSCEVCGSGFMTLRLLKKHLEVHETGNFPCDRCSKIFSTTHKRALHIRGVHMKLCPRRCPMCPERFNSNYKRTIHLQDVHNQSTRVHKCKTCGRGFHLKYHLISHVRSVHLQERNQQCDVCLQRFSNKESLKRHMVVHTGEKNYKCEVCGMAFLRRKNLKDHLRLHEIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702219;
- 90% Identity
- iTF_00703246;
- 80% Identity
- -