Etri030724.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041629.1:2968499-2971767[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.024 2.1 9.9 0.2 1 20 66 85 66 89 0.86 2 18 0.0064 0.54 11.7 1.0 2 23 120 142 119 142 0.92 3 18 0.00067 0.057 14.8 1.4 1 23 164 186 164 186 0.99 4 18 0.064 5.5 8.6 0.7 1 23 190 212 190 212 0.91 5 18 0.00089 0.076 14.4 0.3 1 23 217 240 217 240 0.89 6 18 0.00058 0.049 15.0 2.0 1 23 246 269 246 269 0.96 7 18 0.0063 0.54 11.7 2.5 1 23 276 299 276 299 0.97 8 18 3.3e-05 0.0028 18.9 0.2 3 23 307 327 306 327 0.99 9 18 3.2e-07 2.7e-05 25.2 1.2 1 23 333 355 333 355 0.99 10 18 0.072 6.2 8.4 1.8 1 12 361 372 361 374 0.90 11 18 0.054 4.6 8.8 0.2 1 23 491 513 491 513 0.97 12 18 1.2 1e+02 4.6 0.1 1 23 585 607 585 607 0.90 13 18 0.00066 0.056 14.8 0.2 1 23 611 633 611 633 0.98 14 18 0.019 1.6 10.2 1.3 1 23 638 661 638 661 0.95 15 18 0.0075 0.64 11.5 0.4 2 23 668 690 668 690 0.93 16 18 0.002 0.17 13.3 6.1 1 23 697 720 697 720 0.97 17 18 3.2e-05 0.0027 18.9 0.7 2 23 727 748 726 748 0.96 18 18 0.00024 0.021 16.2 0.8 1 23 754 776 754 776 0.98
Sequence Information
- Coding Sequence
- ATGATAAACGgTGTTGACGAGCACACTTCCTACGAGACTAAAGATGACACACTCACTCAAAACAATACAGCAAACAACACGCAAACACTGACTGTAAACAATAAAACAGACCCCGAGGAGCAATCCAGGAAGGATAGTGTCTTGACGCTTCTAGAATGTTCCAGAATATGCCCTTTCAAATGGACGAAAAACTTATACTTCTGTATTTACTGCGAAGAATCATTCGCTGACCCCGCAAAACTGCGTAAGCACGCATTCGCAGAACACGACAACATTCGACCAGAGGAGATTAAACAGAAATTGATATTAATCGGAAGAAAACGGCACGAGTTCCTTAAAACAGACATCACTGATCTTAGCTGTAAACTTTGTGACACAACTATTATCTCACTGGACCATCTCAAAAAACATCTCATCgaaaaacacaaaaagaaaaTCAACCTAAAATCCCACCTTGGGATACTCCCGTTCAAAATAAACGTAGACGATTACAAATGCGTAATTTGCGATGAAAAATACGGGGAGTACAAGACTTTAAACCATCACATGAACGTTCACTTTCAGAACTACATTTGTGAACAATGCGGTTCTGGTTTCATAACCCCTGCACGGTTACGGGTCCACTGCTTCACCCACGAAACCGGTTCCTTTGCCTGCAGTGATTGTAACAAAGTTTTTCGCTCCAGCAACGCTAATAAAGAACACTACGCCGATGTACACTTGAAGGTTAAACGACACAGATGCCCTCAATGCCCCGAGACCTTCAGGAACTACTTCCAAAGAACGAAGCACATATCAATCGTTCACGGGGTCAAGATGAAAGAATTTAAGTGTGATTTCTGCCCTAAAGTTTTCCACTACAGCGGGAAAATGGCTGGTCACATTCGACACGcgcatttaaaagaaaaacgcCATGGTTGTGACTTATGCGACTGGAAATTTTACTCGCCGTATGAATTGAAACAGCATATGATAAAACACGGTGGCGAGAGAAAGTATCAGTGCAATGTATGCAAGAAAGCATATGCAAGGAAGTATACACTCCGAGAGCATATGAGGATCCATGAGAATGATAGACGATTTGTTTGCACGGTTTGCGGGAAGACGTTTGTGCAGGCGTGTAGAAGCCAAATAGCTGCGACGAAGCAAACGAAAATTGTTCCACTCTTCCAAGTGGCTTACGATCGCAGCCTCTGCAAACCTCTCGGAACGATCTCAGACTTCAGAAAACTGCAAAGAACACAGAATATATCACCCTCAGACACTGTCGCGCACGAAAACTCTCGAAGCCCATCGCCGGCTTGCCCAAGAACCCCATCACCGTACGCTCCCGAAGAAGAATCAGACATCAATCCACCTGCGAAGTATCTACTGAAACAACAACCTGCGAAGGTCTCCGATTGCAGACAGAACGCTCTTATAGTCTTCGAATACTCCACTGCTTACCCTTTCATATTCTCAAACAACAGTTACAGGTGCTTTGTCTGCTCCGAATCGTATTTAGACGTTCCGAACCTTAAGATCCATATGTCGGAACACCCTTTCGCTCATATCAAACGACTAATAAACAACAGAAAGGAAAATGTTCTTAAAGTCGACGTCAGTGAACTGACTTGCAAACTCTGCATGCTGCCTATGAGAGATTTGGTCATATTGAAGCATCATCTTAAGAACGAGCACAATAAGCCGGTTGATACAGAGCTGCAAGACAACCTAGTGCCTTATGATCTAACCATACACGGTCCTGAGGGGTACCAGTGCGTTGTATGCGAGCAGAACTTCATTAAAGTCCGCATCCTCGTCATTCACATGAGCGATCACTACAGCAACTACAGCTGCGAAGTCTGCGGATCGGGATTCATGACACTACGGCTGCTAAAGAAGCATCTAGAAGTCCACGAGACTGGCAACTTCCCTTGTGATCGCTGCAGCAAAATCTTTAGCACTACGCACAAGAGGGCTTTGCATATCCGCGGGGTTCATATGAAACTGTGCCCGCGGCGATGTCCCATGTGTCCAGAGCGGTTCAATTCTAACTACAAACGGACAATACACCTCCAAGACGTACATAATCAATCCACTAGAGTCCATAAATGTAAGACATGTGGTCGTGGTTTCCACCTGAAGTATCATTTGATAAGCCACGTGCGTTCCGTGCATTTACAAGAGCGGAATCAACAGTGCGATGTGTGTCTACAGCGGTTTTCTAATAAGGAGTCTTTGAAGCGACATATGGTGGTTCATACAGGAGAAAAGAACTATAAGTGTGAAGTTTGTGGAATGGCGTTCTTGAGGAGGAAGAATTTGAAGGACCATTCACGGCTGCATGAGATTCATTAA
- Protein Sequence
- MINGVDEHTSYETKDDTLTQNNTANNTQTLTVNNKTDPEEQSRKDSVLTLLECSRICPFKWTKNLYFCIYCEESFADPAKLRKHAFAEHDNIRPEEIKQKLILIGRKRHEFLKTDITDLSCKLCDTTIISLDHLKKHLIEKHKKKINLKSHLGILPFKINVDDYKCVICDEKYGEYKTLNHHMNVHFQNYICEQCGSGFITPARLRVHCFTHETGSFACSDCNKVFRSSNANKEHYADVHLKVKRHRCPQCPETFRNYFQRTKHISIVHGVKMKEFKCDFCPKVFHYSGKMAGHIRHAHLKEKRHGCDLCDWKFYSPYELKQHMIKHGGERKYQCNVCKKAYARKYTLREHMRIHENDRRFVCTVCGKTFVQACRSQIAATKQTKIVPLFQVAYDRSLCKPLGTISDFRKLQRTQNISPSDTVAHENSRSPSPACPRTPSPYAPEEESDINPPAKYLLKQQPAKVSDCRQNALIVFEYSTAYPFIFSNNSYRCFVCSESYLDVPNLKIHMSEHPFAHIKRLINNRKENVLKVDVSELTCKLCMLPMRDLVILKHHLKNEHNKPVDTELQDNLVPYDLTIHGPEGYQCVVCEQNFIKVRILVIHMSDHYSNYSCEVCGSGFMTLRLLKKHLEVHETGNFPCDRCSKIFSTTHKRALHIRGVHMKLCPRRCPMCPERFNSNYKRTIHLQDVHNQSTRVHKCKTCGRGFHLKYHLISHVRSVHLQERNQQCDVCLQRFSNKESLKRHMVVHTGEKNYKCEVCGMAFLRRKNLKDHSRLHEIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702219;
- 90% Identity
- iTF_00703246;
- 80% Identity
- -